Showing results 1 to 20 of 57
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| Issue Date | Title | Author(s) |
| 13-Jan-2017 | A biochemical machine for the interconversion of mutual information and work | McGrath, T; Jones, NS; Wolde, PRT; Ouldridge, TE; , et al |
| 21-Jun-2014 | A nucleotide-level coarse-grained model of RNA | Sulc, P; Romano, F; Ouldridge, TE; Doye, JPK; Louis, AA |
| Jun-2021 | A primer on the oxDNA model of DNA: When to use it, how to simulate it and how to interpret the results | Sengar, A; Ouldridge, TE; Henrich, O; Rovigatti, L; Sulc, P, et al |
| 10-Mar-2023 | A universal method for analyzing copolymer growth | Qureshi, BJ; Juritz, J; Poulton, JM; Beersing-Vasquez, A; Ouldridge, TE |
| 18-Feb-2022 | Building an RNA-based toggle switch using inhibitory RNA aptamers | Climent-Catala, A; Ouldridge, TE; Stan, G-BV; Bae, W; , et al |
| 1-Jan-2015 | Characterizing the bending and flexibility induced by bulges in DNA duplexes | Schreck, JS; Ouldridge, TE; Romano, F; Louis, AA; Doye, JPK |
| 24-Aug-2017 | Chemical Boltzmann Machines | Poole, W; Ortiz-Muñoz, A; Behera, A; Jones, NS; Ouldridge, TE, et al |
| 10-May-2018 | Coarse-grained simulation of DNA using LAMMPS : an implementation of the oxDNA model and its applications | Henrich, O; Gutiérrez Fosado, YA; Curk, T; Ouldridge, TE; |
| 28-Feb-2013 | Coarse-grained simulations of DNA overstretching | Romano, F; Chakraborty, D; Doye, JPK; Ouldridge, TE; Louis, AA |
| 1-Jan-2013 | Coarse-graining DNA for simulations of DNA nanotechnology | Doye, JPK; Ouldridge, TE; Louis, AA; Romano, F; Sulc, P, et al |
| 23-Aug-2017 | Designing the Optimal Bit: Balancing Energetic Cost, Speed and Reliability | Deshpande, A; Gopalkrishnan, M; Ouldridge, TE; Jones, N; |
| 14-Jan-2016 | Direct Simulation of the Self-Assembly of a Small DNA Origami. | Snodin, BE; Romano, F; Rovigatti, L; Ouldridge, TE; Louis, AA, et al |
| 27-Dec-2017 | DNA bipedal motor walking dynamics: an experimental and theoretical study of the dependency on step size | Khara, DC; Schreck, JS; Tomov, TE; Berger, Y; Ouldridge, TE, et al |
| 27-Sep-2012 | DNA Cruciform Arms Nucleate through a Correlated but Asynchronous Cooperative Mechanism | Matek, C; Ouldridge, TE; Levy, A; Doye, JPK; Louis, AA |
| 8-Jun-2015 | DNA hairpins destabilize duplexes primarily by promoting melting rather than by inhibiting hybridization. | Schreck, JS; Ouldridge, TE; Romano, F; Šulc, P; Shaw, LP, et al |
| 1-Oct-2013 | DNA hybridization kinetics: zippering, internal displacement and sequence dependence | Ouldridge, TE; Sulc, P; Romano, F; Doye, JPK; Louis, AA |
| 2-Jan-2015 | DNA nanotechnology: understanding and optimisation through simulation | Ouldridge, TE |
| 21-Jun-2021 | Edge-effects dominate copying thermodynamics for finite-length molecular oligomers | Poulton, JM; Ouldridge, TE |
| 15-Dec-2023 | Evaluating DFHBI-responsive RNA light-up aptamers as fluorescent reporters for gene expression | Climent-Catala, A; Casas-Rodrigo, I; Iyer, S; Ledesma-Amaro, R; Ouldridge, TE |
| 17-Mar-2010 | Extracting bulk properties of self-assembling systems from small simulations | Ouldridge, TE; Louis, AA; Doye, JPK |