Biochemical Szilard engines for memory-limited inference
File(s)BiochemicalSzilardEngines.pdf (3.39 MB)
Published version
Author(s)
Brittain, Rory
Jones, Nick
Ouldridge, Thomas
Type
Journal Article
Abstract
By designing and leveraging an explicit molecular realisation of a measurement-and-feedback-powered Szilard engine, we investigate the extraction of work from complex environments by minimal machines with finite capacity for memory and decision-making. Living systems perform inference to exploit complex structure, or correlations, in their environment, but the physical limits and underlying cost/benefit trade-offs involved in doing so remain unclear. To probe these questions, we consider a minimal model for a structured environment—a correlated sequence of molecules—and explore mechanisms based on extended Szilard engines for extracting the work stored in these non-equilibrium correlations. We consider systems limited to a single bit of memory making binary 'choices' at each step. We demonstrate that increasingly complex environments allow increasingly sophisticated inference strategies to extract more free energy than simpler alternatives, and argue that optimal design of such machines should also consider the free energy reserves required to ensure robustness against fluctuations due to mistakes.
Date Issued
2019-06-20
Date Acceptance
2019-05-24
Citation
New Journal of Physics, 2019, 21 (6)
ISSN
1367-2630
Publisher
IOP Publishing
Journal / Book Title
New Journal of Physics
Volume
21
Issue
6
Copyright Statement
© 2019 The Author(s). Published by IOP Publishing Ltd on behalf of the Institute of Physics and Deutsche Physikalische Gesellschaft. Original content from this work may be used under the terms of the Creative Commons Attribution 3.0 licence ( https://creativecommons.org/licenses/by/3.0/ ). Any further distribution of this work must maintain attribution to the author(s) and the title of the work, journal citation and DOI.
Sponsor
The Royal Society
Grant Number
UF150067
Subjects
cond-mat.stat-mech
cond-mat.stat-mech
cond-mat.soft
physics.bio-ph
q-bio.MN
02 Physical Sciences
Fluids & Plasmas
Publication Status
Published
Article Number
063022