The Minimum Information Required for a Glycomics Experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data

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Title: The Minimum Information Required for a Glycomics Experiment (MIRAGE) project: improving the standards for reporting glycan microarray-based data
Author(s): Liu, Y
McBride, R
Stoll, M
Palma, AS
Silva, L
Agravat, S
Aoki-Kinoshita, KF
Campbell, MP
Costello, CE
Dell, A
Haslam, SM
Karlsson, NG
Khoo, K-H
Kolarich, D
Novotny, M
Packer, NH
Ranzinger, R
Rapp, E
Rudd, PM
Struwe, WB
Tiemeyer, M
Wells, L
York, WS
Zaia, J
Kettner, C
Paulson, JC
Feizi, T
Smith, DF
Item Type: Journal Article
Abstract: MIRAGE (Minimum Information Required for A Glycomics Experiment) is an initiative that was created by experts in the fields of glycobiology, glycoanalytics, and glycoinformatics to produce guidelines for reporting results from the diverse types of experiments and analyses used in structural and functional studies of glycans in the scientific literature. As a sequel to the guidelines for sample preparation (Struwe et al. 2016, Glycobiology, 26, 907-910) and mass spectrometry (MS) data (Kolarich et al. 2013, Mol. Cell Proteomics. 12, 991-995), here we present the first version of guidelines intended to improve the standards for reporting data from glycan microarray analyses. For each of eight areas in the workflow of a glycan microarray experiment, we provide guidelines for the minimal information that should be provided in reporting results. We hope that the MIRAGE glycan microarray guidelines proposed here will gain broad acceptance by the community, and will facilitate interpretation and reproducibility of the glycan microarray results with implications in comparison of data from different laboratories and eventual deposition of glycan microarray data in international databases.
Publication Date: 19-Dec-2016
Date of Acceptance: 14-Nov-2016
URI: http://hdl.handle.net/10044/1/42703
DOI: https://dx.doi.org/10.1093/glycob/cww118
ISSN: 1460-2423
Publisher: Oxford University Press (OUP)
Start Page: 280
End Page: 284
Journal / Book Title: Glycobiology
Volume: 27
Issue: 4
Copyright Statement: © The Author 2016. Published by Oxford University Press. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
Sponsor/Funder: Biotechnology and Biological Sciences Research Council (BBSRC)
Funder's Grant Number: BB/K016164/1
Keywords: Science & Technology
Life Sciences & Biomedicine
Biochemistry & Molecular Biology
glycan microarrays
glycans
glycobiology
glycomics
MIRAGE
SHOTGUN GLYCOMICS
MASS-SPECTROMETRY
BINDING-PROTEINS
EXPERIMENT MIAME
ARRAY DATA
RECEPTORS
OLIGOSACCHARIDES
NEOGLYCOLIPIDS
SPECIFICITIES
BIOMARKERS
MIRAGE
glycan microarrays
glycans
glycobiology
glycomics
Biochemistry & Molecular Biology
11 Medical And Health Sciences
06 Biological Sciences
Publication Status: Published
Appears in Collections:Department of Medicine
Faculty of Medicine
Faculty of Natural Sciences



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