Structural Basis of Gate-DNA Breakage and Resealing by Type II Topoisomerases

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Title: Structural Basis of Gate-DNA Breakage and Resealing by Type II Topoisomerases
Authors: Laponogov, I
Pan, XS
Veselkov, DA
McAuley, KE
Fisher, LM
Sanderson, MR
Item Type: Journal Article
Abstract: Type II DNA topoisomerases are ubiquitous enzymes with essential functions in DNA replication, recombination and transcription. They change DNA topology by forming a transient covalent cleavage complex with a gate-DNA duplex that allows transport of a second duplex though the gate. Despite its biological importance and targeting by anticancer and antibacterial drugs, cleavage complex formation and reversal is not understood for any type II enzyme. To address the mechanism, we have used X-ray crystallography to study sequential states in the formation and reversal of a DNA cleavage complex by topoisomerase IV from Streptococcus pneumoniae, the bacterial type II enzyme involved in chromosome segregation. A high resolution structure of the complex captured by a novel antibacterial dione reveals two drug molecules intercalated at a cleaved B-form DNA gate and anchored by drug-specific protein contacts. Dione release generated drug-free cleaved and resealed DNA complexes in which the DNA gate instead adopts an unusual A/B-form helical conformation with a Mg(2+) ion repositioned to coordinate each scissile phosphodiester group and promote reversible cleavage by active-site tyrosines. These structures, the first for putative reaction intermediates of a type II topoisomerase, suggest how a type II enzyme reseals DNA during its normal reaction cycle and illuminate aspects of drug arrest important for the development of new topoisomerase-targeting therapeutics.
Issue Date: 28-Jun-2010
Date of Acceptance: 7-Jun-2010
URI: http://hdl.handle.net/10044/1/38500
DOI: http://dx.doi.org/10.1371/journal.pone.0011338
ISSN: 1932-6203
Publisher: Public Library of Science
Journal / Book Title: PLOS One
Volume: 5
Issue: 6
Copyright Statement: © 2010 Laponogov et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Keywords: Crystallography, X-Ray
DNA
DNA Replication
DNA Topoisomerase IV
Models, Molecular
Nucleic Acid Conformation
Recombination, Genetic
Streptococcus pneumoniae
Transcription, Genetic
General Science & Technology
MD Multidisciplinary
Publication Status: Published
Article Number: e11338
Appears in Collections:Division of Surgery
Faculty of Medicine



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