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Complexity reduction in density functional theory calculations of large systems: system partitioning and fragment embedding.
File | Description | Size | Format | |
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Complexity_reduction_2A_accepted.pdf | Accepted version | 1.64 MB | Adobe PDF | View/Open |
Title: | Complexity reduction in density functional theory calculations of large systems: system partitioning and fragment embedding. |
Authors: | Dawson, W Mohr, S Ratcliff, LE Nakajima, T Genovese, L |
Item Type: | Journal Article |
Abstract: | With the development of low order scaling methods for performing Kohn-Sham density functional theory, it is now possible to perform fully quantum mechanical calculations of systems containing tens of thousands of atoms. However, with an increase in the size of the system treated comes an increase in complexity, making it challenging to analyze such large systems and determine the cause of emergent properties. To address this issue, in this paper, we present a systematic complexity reduction methodology which can break down large systems into their constituent fragments and quantify interfragment interactions. The methodology proposed here requires no a priori information or user interaction, allowing a single workflow to be automatically applied to any system of interest. We apply this approach to a variety of different systems and show how it allows for the derivation of new system descriptors, the design of QM/MM partitioning schemes, and the novel application of graph metrics to molecules and materials. |
Issue Date: | 12-May-2020 |
Date of Acceptance: | 1-Mar-2020 |
URI: | http://hdl.handle.net/10044/1/79239 |
DOI: | 10.1021/acs.jctc.9b01152 |
ISSN: | 1549-9618 |
Publisher: | American Chemical Society |
Start Page: | 2952 |
End Page: | 2964 |
Journal / Book Title: | Journal of Chemical Theory and Computation |
Volume: | 16 |
Issue: | 5 |
Copyright Statement: | © 2020 American Chemical Society. This document is the Accepted Manuscript version of a Published Work that appeared in final form in Journal of Chemical Theory and Computation, after peer review and technical editing by the publisher. To access the final edited and published work see https://doi.org/10.1021/acs.jctc.9b01152 |
Keywords: | 0307 Theoretical and Computational Chemistry 0601 Biochemistry and Cell Biology 0803 Computer Software Chemical Physics |
Publication Status: | Published |
Conference Place: | United States |
Online Publication Date: | 2020-03-27 |
Appears in Collections: | Materials |