298
IRUS Total
Downloads
  Altmetric

Rare coding variants in genes encoding GABA(A) receptors in genetic generalised epilepsies: an exome-based case-control study

File Description SizeFormat 
LancetNeurology.revision.final.docxAccepted version126.82 kBMicrosoft WordView/Open
Title: Rare coding variants in genes encoding GABA(A) receptors in genetic generalised epilepsies: an exome-based case-control study
Authors: May, P
Girard, S
Harrer, M
Bobbili, DR
Schubert, J
Wolking, S
Becker, F
Lachance-Touchette, P
Meloche, C
Gravel, M
Niturad, CE
Knaus, J
De Kovel, C
Toliat, M
Polvi, A
Iacomino, M
Guerrero-Lopez, R
Baulac, S
Marini, C
Thiele, H
Altmueller, J
Jabbari, K
Ruppert, A-K
Jurkowski, W
Lal, D
Rusconi, R
Cestele, S
Terragni, B
Coombs, ID
Reid, CA
Striano, P
Caglayan, H
Siren, A
Everett, K
Moller, RS
Hjalgrim, H
Muhle, H
Helbig, I
Kunz, WS
Weber, YG
Weckhuysen, S
De Jonghe, P
Sisodiya, SM
Nabbout, R
Franceschetti, S
Coppola, A
Vari, MS
Trenite, DK-N
Baykan, B
Ozbek, U
Bebek, N
Klein, KM
Rosenow, F
Nguyen, DK
Dubeau, F
Carmant, L
Lortie, A
Desbiens, R
Clement, J-F
Cieuta-Walti, C
Sills, GJ
Auce, P
Francis, B
Johnson, MR
Marson, AG
Berghuis, B
Sander, JW
Avbersek, A
McCormack, M
Cavalleri, GL
Delanty, N
Depondt, C
Krenn, M
Zimprich, F
Peter, S
Nikanorova, M
Kraaij, R
Van Rooij, J
Balling, R
Ikram, MA
Uitterlinden, AG
Avanzini, G
Schorge, S
Petrou, S
Mantegazza, M
Sander, T
LeGuern, E
Serratosa, JM
Koeleman, BPC
Palotie, A
Lehesjoki, A-E
Nothnagel, M
Nuernberg, P
Maljevic, S
Zara, F
Cossette, P
Krause, R
Lerche, H
Item Type: Journal Article
Abstract: Background Genetic generalised epilepsy is the most common type of inherited epilepsy. Despite a high concordance rate of 80% in monozygotic twins, the genetic background is still poorly understood. We aimed to investigate the burden of rare genetic variants in genetic generalised epilepsy. Methods For this exome-based case-control study, we used three different genetic generalised epilepsy case cohorts and three independent control cohorts, all of European descent. Cases included in the study were clinically evaluated for genetic generalised epilepsy. Whole-exome sequencing was done for the discovery case cohort, a validation case cohort, and two independent control cohorts. The replication case cohort underwent targeted next-generation sequencing of the 19 known genes encoding subunits of GABAA receptors and was compared to the respective GABAA receptor variants of a third independent control cohort. Functional investigations were done with automated two-microelectrode voltage clamping in Xenopus laevis oocytes. Findings Statistical comparison of 152 familial index cases with genetic generalised epilepsy in the discovery cohort to 549 ethnically matched controls suggested an enrichment of rare missense (Nonsyn) variants in the ensemble of 19 genes encoding GABAA receptors in cases (odds ratio [OR] 2·40 [95% CI 1·41–4·10]; pNonsyn=0·0014, adjusted pNonsyn=0·019). Enrichment for these genes was validated in a whole-exome sequencing cohort of 357 sporadic and familial genetic generalised epilepsy cases and 1485 independent controls (OR 1·46 [95% CI 1·05–2·03]; pNonsyn=0·0081, adjusted pNonsyn=0·016). Comparison of genes encoding GABAA receptors in the independent replication cohort of 583 familial and sporadic genetic generalised epilepsy index cases, based on candidate-gene panel sequencing, with a third independent control cohort of 635 controls confirmed the overall enrichment of rare missense variants for 15 GABAA receptor genes in cases compared with controls (OR 1·46 [95% CI 1·02–2·08]; pNonsyn=0·013, adjusted pNonsyn=0·027). Functional studies for two selected genes (GABRB2 and GABRA5) showed significant loss-of-function effects with reduced current amplitudes in four of seven tested variants compared with wild-type receptors. Interpretation Functionally relevant variants in genes encoding GABAA receptor subunits constitute a significant risk factor for genetic generalised epilepsy. Examination of the role of specific gene groups and pathways can disentangle the complex genetic architecture of genetic generalised epilepsy.
Issue Date: 1-Aug-2018
Date of Acceptance: 1-Jul-2018
URI: http://hdl.handle.net/10044/1/61885
DOI: https://dx.doi.org/10.1016/S1474-4422(18)30215-1
ISSN: 1474-4422
Publisher: Elsevier
Start Page: 699
End Page: 708
Journal / Book Title: Lancet Neurology
Volume: 17
Issue: 8
Copyright Statement: © 2018 Elsevier Ltd. All rights reserved. This manuscript is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International Licence http://creativecommons.org/licenses/by-nc-nd/4.0/
Sponsor/Funder: Wellcome Trust
Commission of the European Communities
Imperial College Healthcare NHS Trust- BRC Funding
Funder's Grant Number: 066056/Z/01/Z
279062
RDA03
Keywords: Science & Technology
Life Sciences & Biomedicine
Clinical Neurology
Neurosciences & Neurology
DE-NOVO MUTATIONS
EPILEPTIC ENCEPHALOPATHIES
ABSENCE EPILEPSY
15Q13.3 MICRODELETIONS
ASSOCIATION ANALYSIS
FEBRILE SEIZURES
SEQUENCE DATA
MOUSE MODEL
RISK
GAMMA-2-SUBUNIT
1103 Clinical Sciences
1109 Neurosciences
Neurology & Neurosurgery
Publication Status: Published
Online Publication Date: 2018-07-17
Appears in Collections:Department of Medicine (up to 2019)