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Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition).

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Monitoring ATG 9-7-2015 final version.docxAccepted version5.32 MBMicrosoft WordView/Open
Title: Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition).
Authors: Klionsky, DJ
Abdelmohsen, K
Abe, A
Abedin, MJ
Abeliovich, H
Acevedo Arozena, A
Adachi, H
Adams, CM
Adams, PD
Adeli, K
Adhihetty, PJ
Adler, SG
Agam, G
Agarwal, R
Aghi, MK
Agnello, M
Agostinis, P
Aguilar, PV
Aguirre-Ghiso, J
Airoldi, EM
Ait-Si-Ali, S
Akematsu, T
Akporiaye, ET
Al-Rubeai, M
Albaiceta, GM
Albanese, C
Albani, D
Albert, ML
Aldudo, J
Algül, H
Alirezaei, M
Alloza, I
Almasan, A
Almonte-Beceril, M
Alnemri, ES
Alonso, C
Altan-Bonnet, N
Altieri, DC
Alvarez, S
Alvarez-Erviti, L
Alves, S
Amadoro, G
Amano, A
Amantini, C
Ambrosio, S
Amelio, I
Amer, AO
Amessou, M
Amon, A
An, Z
Anania, FA
Andersen, SU
Andley, UP
Andreadi, CK
Andrieu-Abadie, N
Anel, A
Ann, DK
Anoopkumar-Dukie, S
Antonioli, M
Aoki, H
Apostolova, N
Aquila, S
Aquilano, K
Araki, K
Arama, E
Aranda, A
Araya, J
Arcaro, A
Arias, E
Arimoto, H
Ariosa, AR
Armstrong, JL
Arnould, T
Arsov, I
Asanuma, K
Askanas, V
Asselin, E
Atarashi, R
Atherton, SS
Atkin, JD
Attardi, LD
Auberger, P
Auburger, G
Aurelian, L
Autelli, R
Avagliano, L
Avantaggiati, ML
Avrahami, L
Awale, S
Azad, N
Bachetti, T
Backer, JM
Bae, DH
Bae, JS
Bae, ON
Bae, SH
Baehrecke, EH
Baek, SH
Baghdiguian, S
Bagniewska-Zadworna, A
Bai, H
Bai, J
Bai, XY
Bailly, Y
Balaji, KN
Balduini, W
Ballabio, A
Balzan, R
Banerjee, R
Bánhegyi, G
Bao, H
Barbeau, B
Barrachina, MD
Barreiro, E
Bartel, B
Bartolomé, A
Bassham, DC
Bassi, MT
Bast, RC
Basu, A
Batista, MT
Batoko, H
Battino, M
Bauckman, K
Baumgarner, BL
Bayer, KU
Beale, R
Beaulieu, JF
Beck, GR
Becker, C
Beckham, JD
Bédard, PA
Bednarski, PJ
Begley, TJ
Behl, C
Behrends, C
Behrens, GM
Behrns, KE
Bejarano, E
Belaid, A
Belleudi, F
Bénard, G
Berchem, G
Bergamaschi, D
Bergami, M
Berkhout, B
Berliocchi, L
Bernard, A
Bernard, M
Bernassola, F
Bertolotti, A
Bess, AS
Besteiro, S
Bettuzzi, S
Bhalla, S
Bhattacharyya, S
Bhutia, SK
Biagosch, C
Bianchi, MW
Biard-Piechaczyk, M
Billes, V
Bincoletto, C
Bingol, B
Bird, SW
Bitoun, M
Bjedov, I
Blackstone, C
Blanc, L
Blanco, GA
Blomhoff, HK
Boada-Romero, E
Böckler, S
Boes, M
Boesze-Battaglia, K
Boise, LH
Bolino, A
Boman, A
Bonaldo, P
Bordi, M
Bosch, J
Botana, LM
Botti, J
Bou, G
Bouché, M
Bouchecareilh, M
Boucher, MJ
Boulton, ME
Bouret, SG
Boya, P
Boyer-Guittaut, M
Bozhkov, PV
Brady, N
Braga, VM
Brancolini, C
Braus, GH
Bravo-San Pedro, JM
Brennan, LA
Bresnick, EH
Brest, P
Bridges, D
Bringer, MA
Brini, M
Brito, GC
Brodin, B
Brookes, PS
Brown, EJ
Brown, K
Broxmeyer, HE
Bruhat, A
Brum, PC
Brumell, JH
Brunetti-Pierri, N
Bryson-Richardson, RJ
Buch, S
Buchan, AM
Budak, H
Bulavin, DV
Bultman, SJ
Bultynck, G
Bumbasirevic, V
Burelle, Y
Burke, RE
Burmeister, M
Bütikofer, P
Caberlotto, L
Cadwell, K
Cahova, M
Cai, D
Cai, J
Cai, Q
Calatayud, S
Camougrand, N
Campanella, M
Campbell, GR
Campbell, M
Campello, S
Candau, R
Caniggia, I
Cantoni, L
Cao, L
Caplan, AB
Caraglia, M
Cardinali, C
Cardoso, SM
Carew, JS
Carleton, LA
Carlin, CR
Carloni, S
Carlsson, SR
Carmona-Gutierrez, D
Carneiro, LA
Carnevali, O
Carra, S
Carrier, A
Carroll, B
Casas, C
Casas, J
Cassinelli, G
Castets, P
Castro-Obregon, S
Cavallini, G
Ceccherini, I
Cecconi, F
Cederbaum, AI
Ceña, V
Cenci, S
Cerella, C
Cervia, D
Cetrullo, S
Chaachouay, H
Chae, HJ
Chagin, AS
Chai, CY
Chakrabarti, G
Chamilos, G
Chan, EY
Chan, MT
Chandra, D
Chandra, P
Chang, CP
Chang, RC
Chang, TY
Chatham, JC
Chatterjee, S
Chauhan, S
Che, Y
Cheetham, ME
Cheluvappa, R
Chen, CJ
Chen, G
Chen, GC
Chen, G
Chen, H
Chen, JW
Chen, JK
Chen, M
Chen, M
Chen, P
Chen, Q
Chen, Q
Chen, SD
Chen, S
Chen, SS
Chen, W
Chen, WJ
Chen, WQ
Chen, W
Chen, X
Chen, YH
Chen, YG
Chen, Y
Chen, Y
Chen, Y
Chen, YJ
Chen, YQ
Chen, Y
Chen, Z
Chen, Z
Cheng, A
Cheng, CH
Cheng, H
Cheong, H
Cherry, S
Chesney, J
Cheung, CH
Chevet, E
Chi, HC
Chi, SG
Chiacchiera, F
Chiang, HL
Chiarelli, R
Chiariello, M
Chieppa, M
Chin, LS
Chiong, M
Chiu, GN
Cho, DH
Cho, SG
Cho, WC
Cho, YY
Cho, YS
Choi, AM
Choi, EJ
Choi, EK
Choi, J
Choi, ME
Choi, SI
Chou, TF
Chouaib, S
Choubey, D
Choubey, V
Chow, KC
Chowdhury, K
Chu, CT
Chuang, TH
Chun, T
Chung, H
Chung, T
Chung, YL
Chwae, YJ
Cianfanelli, V
Ciarcia, R
Ciechomska, IA
Ciriolo, MR
Cirone, M
Claerhout, S
Clague, MJ
Clària, J
Clarke, PG
Clarke, R
Clementi, E
Cleyrat, C
Cnop, M
Coccia, EM
Cocco, T
Codogno, P
Coers, J
Cohen, EE
Colecchia, D
Coletto, L
Coll, NS
Colucci-Guyon, E
Comincini, S
Condello, M
Cook, KL
Coombs, GH
Cooper, CD
Cooper, JM
Coppens, I
Corasaniti, MT
Corazzari, M
Corbalan, R
Corcelle-Termeau, E
Cordero, MD
Corral-Ramos, C
Corti, O
Cossarizza, A
Costelli, P
Costes, S
Cotman, SL
Coto-Montes, A
Cottet, S
Couve, E
Covey, LR
Cowart, LA
Cox, JS
Coxon, FP
Coyne, CB
Cragg, MS
Craven, RJ
Crepaldi, T
Crespo, JL
Criollo, A
Crippa, V
Cruz, MT
Cuervo, AM
Cuezva, JM
Cui, T
Cutillas, PR
Czaja, MJ
Czyzyk-Krzeska, MF
Dagda, RK
Dahmen, U
Dai, C
Dai, W
Dai, Y
Dalby, KN
Dalla Valle, L
Dalmasso, G
D'Amelio, M
Damme, M
Darfeuille-Michaud, A
Dargemont, C
Darley-Usmar, VM
Dasarathy, S
Dasgupta, B
Dash, S
Dass, CR
Davey, HM
Davids, LM
Dávila, D
Davis, RJ
Dawson, TM
Dawson, VL
Daza, P
De Belleroche, J
De Figueiredo, P
De Figueiredo, RC
De la Fuente, J
De Martino, L
De Matteis, A
De Meyer, GR
De Milito, A
De Santi, M
De Souza, W
De Tata, V
De Zio, D
Debnath, J
Dechant, R
Decuypere, JP
Deegan, S
Dehay, B
Del Bello, B
Del Re, DP
Delage-Mourroux, R
Delbridge, LM
Deldicque, L
Delorme-Axford, E
Deng, Y
Dengjel, J
Denizot, M
Dent, P
Der, CJ
Deretic, V
Derrien, B
Deutsch, E
Devarenne, TP
Devenish, RJ
Di Bartolomeo, S
Di Daniele, N
Di Domenico, F
Di Nardo, A
Di Paola, S
Di Pietro, A
Di Renzo, L
DiAntonio, A
Díaz-Araya, G
Díaz-Laviada, I
Diaz-Meco, MT
Diaz-Nido, J
Dickey, CA
Dickson, RC
Diederich, M
Digard, P
Dikic, I
Dinesh-Kumar, SP
Ding, C
Ding, WX
Ding, Z
Dini, L
Distler, JH
Diwan, A
Djavaheri-Mergny, M
Dmytruk, K
Dobson, RC
Doetsch, V
Dokladny, K
Dokudovskaya, S
Donadelli, M
Dong, XC
Dong, X
Dong, Z
Donohue, TM
Doran, KS
D'Orazi, G
Dorn, GW
Dosenko, V
Dridi, S
Drucker, L
Du, J
Du, LL
Du, L
Du Toit, A
Dua, P
Duan, L
Duann, P
Dubey, VK
Duchen, MR
Duchosal, MA
Duez, H
Dugail, I
Dumit, VI
Duncan, MC
Dunlop, EA
Dunn, WA
Dupont, N
Dupuis, L
Durán, RV
Durcan, TM
Duvezin-Caubet, S
Duvvuri, U
Eapen, V
Ebrahimi-Fakhari, D
Echard, A
Eckhart, L
Edelstein, CL
Edinger, AL
Eichinger, L
Eisenberg, T
Eisenberg-Lerner, A
Eissa, NT
El-Deiry, WS
El-Khoury, V
Elazar, Z
Eldar-Finkelman, H
Elliott, CJ
Emanuele, E
Emmenegger, U
Engedal, N
Engelbrecht, AM
Engelender, S
Enserink, JM
Erdmann, R
Erenpreisa, J
Eri, R
Eriksen, JL
Erman, A
Escalante, R
Eskelinen, EL
Espert, L
Esteban-Martínez, L
Evans, TJ
Fabri, M
Fabrias, G
Fabrizi, C
Facchiano, A
Færgeman, NJ
Faggioni, A
Fairlie, WD
Fan, C
Fan, D
Fan, J
Fang, S
Fanto, M
Fanzani, A
Farkas, T
Faure, M
Favier, FB
Fearnhead, H
Federici, M
Fei, E
Felizardo, TC
Feng, H
Feng, Y
Feng, Y
Ferguson, TA
Fernández, Á
Fernandez-Barrena, MG
Fernandez-Checa, JC
Fernández-López, A
Fernandez-Zapico, ME
Feron, O
Ferraro, E
Ferreira-Halder, CV
Fesus, L
Feuer, R
Fiesel, FC
Filippi-Chiela, EC
Filomeni, G
Fimia, GM
Fingert, JH
Finkbeiner, S
Finkel, T
Fiorito, F
Fisher, PB
Flajolet, M
Flamigni, F
Florey, O
Florio, S
Floto, RA
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Friedman, SL
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Ganley, IG
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Gao, JX
García Nannig, L
García Véscovi, E
Garcia-Macía, M
Garcia-Ruiz, C
Garg, AD
Garg, PK
Gargini, R
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Gatti, E
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Gelmetti, V
Genazzani, AA
Geng, J
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Gomez-Manzano, C
Gómez-Sánchez, R
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González-Polo, RA
Goping, IS
Gorbea, C
Gorbunov, NV
Goring, DR
Gorman, AM
Gorski, SM
Goruppi, S
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Gotor, C
Gottlieb, RA
Gozes, I
Gozuacik, D
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Graef, M
Granato, GE
Grant, GD
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Gravina, GL
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Greenhough, A
Greenwood, MT
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Gruber, F
Grumati, P
Grune, T
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Gustafsson, Å
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Harper, JW
Harrath, AH
Harris, AL
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Hilfiker, S
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Hofman, P
Höglinger, GU
Höhfeld, J
Holz, MK
Hong, Y
Hood, DA
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Hoppe, T
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Hsu, CY
Hsu, LC
Hu, D
Hu, G
Hu, HM
Hu, H
Hu, MC
Hu, YC
Hu, ZW
Hua, F
Hua, Y
Huang, C
Huang, HL
Huang, KH
Huang, KY
Huang, S
Huang, S
Huang, WP
Huang, YR
Huang, Y
Huang, Y
Huber, TB
Huebbe, P
Huh, WK
Hulmi, JJ
Hur, GM
Hurley, JH
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Jana, NR
Jang, BK
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Janji, B
Jannig, PR
Jansson, PJ
Jean, S
Jendrach, M
Jeon, JH
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Jeung, EB
Jia, K
Jia, L
Jiang, H
Jiang, H
Jiang, L
Jiang, T
Jiang, X
Jiang, X
Jiang, X
Jiang, Y
Jiang, Y
Jiménez, A
Jin, C
Jin, H
Jin, L
Jin, M
Jin, S
Jinwal, UK
Jo, EK
Johansen, T
Johnson, DE
Johnson, GV
Johnson, JD
Jonasch, E
Jones, C
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Jordan, J
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Joseph, B
Joubert, AM
Ju, D
Ju, J
Juan, HF
Juenemann, K
Juhász, G
Jung, HS
Jung, JU
Jung, YK
Jungbluth, H
Justice, MJ
Jutten, B
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Kaarniranta, K
Kaasik, A
Kabuta, T
Kaeffer, B
Kågedal, K
Kahana, A
Kajimura, S
Kakhlon, O
Kalia, M
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Kang, C
Kang, R
Kang, TC
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Kanno, H
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Kaparakis-Liaskos, M
Kapuy, O
Karantza, V
Karim, MR
Karmakar, P
Kaser, A
Kaushik, S
Kawula, T
Kaynar, AM
Ke, PY
Ke, ZJ
Kehrl, JH
Keller, KE
Kemper, JK
Kenworthy, AK
Kepp, O
Kern, A
Kesari, S
Kessel, D
Ketteler, R
Kettelhut, ID
Khambu, B
Khan, MM
Khandelwal, VK
Khare, S
Kiang, JG
Kiger, AA
Kihara, A
Kim, AL
Kim, CH
Kim, DR
Kim, DH
Kim, EK
Kim, HY
Kim, HR
Kim, JS
Kim, JH
Kim, JC
Kim, JH
Kim, KW
Kim, MD
Kim, MM
Kim, PK
Kim, SW
Kim, SY
Kim, YS
Kim, Y
Kimchi, A
Kimmelman, AC
Kimura, T
King, JS
Kirkegaard, K
Kirkin, V
Kirshenbaum, LA
Kishi, S
Kitajima, Y
Kitamoto, K
Kitaoka, Y
Kitazato, K
Kley, RA
Klimecki, WT
Klinkenberg, M
Klucken, J
Knævelsrud, H
Knecht, E
Knuppertz, L
Ko, JL
Kobayashi, S
Koch, JC
Koechlin-Ramonatxo, C
Koenig, U
Koh, YH
Köhler, K
Kohlwein, SD
Koike, M
Komatsu, M
Kominami, E
Kong, D
Kong, HJ
Konstantakou, EG
Kopp, BT
Korcsmaros, T
Korhonen, L
Korolchuk, VI
Koshkina, NV
Kou, Y
Koukourakis, MI
Koumenis, C
Kovács, AL
Kovács, T
Kovacs, WJ
Koya, D
Kraft, C
Krainc, D
Kramer, H
Kravic-Stevovic, T
Krek, W
Kretz-Remy, C
Krick, R
Krishnamurthy, M
Kriston-Vizi, J
Kroemer, G
Kruer, MC
Kruger, R
Ktistakis, NT
Kuchitsu, K
Kuhn, C
Kumar, AP
Kumar, A
Kumar, A
Kumar, D
Kumar, D
Kumar, R
Kumar, S
Kundu, M
Kung, HJ
Kuno, A
Kuo, SH
Kuret, J
Kurz, T
Kwok, T
Kwon, TK
Kwon, YT
Kyrmizi, I
La Spada, AR
Lafont, F
Lahm, T
Lakkaraju, A
Lam, T
Lamark, T
Lancel, S
Landowski, TH
Lane, DJ
Lane, JD
Lanzi, C
Lapaquette, P
Lapierre, LR
Laporte, J
Laukkarinen, J
Laurie, GW
Lavandero, S
Lavie, L
LaVoie, MJ
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Law, HK
Law, KB
Layfield, R
Lazo, PA
Le Cam, L
Le Roch, KG
Le Stunff, H
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Lecuit, M
Lee, BH
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Lee, EF
Lee, GM
Lee, HJ
Lee, H
Lee, JK
Lee, J
Lee, JH
Lee, JH
Lee, M
Lee, MS
Lee, PJ
Lee, SW
Lee, SJ
Lee, SJ
Lee, SY
Lee, SH
Lee, SS
Lee, SJ
Lee, S
Lee, YR
Lee, YJ
Lee, YH
Leeuwenburgh, C
Lefort, S
Legouis, R
Lei, J
Lei, QY
Leib, DA
Leibowitz, G
Lekli, I
Lemaire, SD
Lemasters, JJ
Lemberg, MK
Lemoine, A
Leng, S
Lenz, G
Lenzi, P
Lerman, LO
Lettieri Barbato, D
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Yu, JT
Yu, J
Yu, L
Yu, WH
Yu, XF
Yu, Z
Yuan, J
Yuan, ZM
Yue, BY
Yue, J
Yue, Z
Zacks, DN
Zacksenhaus, E
Zaffaroni, N
Zaglia, T
Zakeri, Z
Zecchini, V
Zeng, J
Zeng, M
Zeng, Q
Zervos, AS
Zhang, DD
Zhang, F
Zhang, G
Zhang, GC
Zhang, H
Zhang, H
Zhang, H
Zhang, H
Zhang, J
Zhang, J
Zhang, J
Zhang, J
Zhang, JP
Zhang, L
Zhang, L
Zhang, L
Zhang, L
Zhang, MY
Zhang, X
Zhang, XD
Zhang, Y
Zhang, Y
Zhang, Y
Zhang, Y
Zhang, Y
Zhao, M
Zhao, WL
Zhao, X
Zhao, YG
Zhao, Y
Zhao, Y
Zhao, YX
Zhao, Z
Zhao, ZJ
Zheng, D
Zheng, XL
Zheng, X
Zhivotovsky, B
Zhong, Q
Zhou, GZ
Zhou, G
Zhou, H
Zhou, SF
Zhou, XJ
Zhu, H
Zhu, H
Zhu, WG
Zhu, W
Zhu, XF
Zhu, Y
Zhuang, SM
Zhuang, X
Ziparo, E
Zois, CE
Zoladek, T
Zong, WX
Zorzano, A
Zughaier, SM
Item Type: Journal Article
Issue Date: 21-Jan-2016
Date of Acceptance: 22-Sep-2015
URI: http://hdl.handle.net/10044/1/31211
DOI: 10.1080/15548627.2015.1100356
ISSN: 1554-8635
Publisher: Taylor & Francis
Start Page: 1
End Page: 215
Journal / Book Title: Autophagy
Volume: 12
Issue: 1
Copyright Statement: This is an Accepted Manuscript of an article published by Taylor & Francis Group in Autophagy on 21 Jan 2016, available online at: http://www.tandfonline.com/10.1080/15548627.2015.1100356
Keywords: LC3
autolysosome
autophagosome
chaperone-mediated autophagy
flux
lysosome
macroautophagy
phagophore
stress
vacuole
Biochemistry & Molecular Biology
0601 Biochemistry And Cell Biology
Publication Status: Published
Appears in Collections:Department of Medicine (up to 2019)