We propose an experimental methodology to visualize asphaltene precipitation in the pore space of rocks and assess the reduction in permeability. We perform core flooding experiments integrated with X-ray microtomography (micro-CT). The simultaneous injection of pure heptane and crude oil containing asphaltene induces the precipitation of asphaltene in the pore space. The degree of precipitation is controlled by the measurement of differential pressure across the sample. After precipitation, doped heptane is injected to replace the fluid to enhance the contrast between precipitated asphaltene and doped heptane. The micro-CT images are segmented into three phases: void, precipitated asphaltene, and rock. In the experiment, we observed that the precipitated asphaltene which occupied 39.1% of the pore volume caused a 29-fold reduction in permeability. Furthermore, we analyze the spatial distribution of precipitated asphaltene which showed that the asphaltene tended to clog the larger pores. We also computed the flow field numerically on the images and obtained good agreement between simulated and measured permeability. The distribution of local velocity showed that after precipitation the flow was confined to narrow channels in the pore space. This method can be applied to any type of porous system with precipitation.