Large-kernel attention for 3D medical image segmentation
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Published version
Author(s)
Li, Hao
Nan, Yang
Del Ser, Javier
Yang, Guang
Type
Journal Article
Abstract
Automated segmentation of multiple organs and tumors from 3D medical images such as magnetic resonance imaging (MRI) and computed tomography (CT) scans using deep learning methods can aid in diagnosing and treating cancer. However, organs often overlap and are complexly connected, characterized by extensive anatomical variation and low contrast. In addition, the diversity of tumor shape, location, and appearance, coupled with the dominance of background voxels, makes accurate 3D medical image segmentation difficult. In this paper, a novel 3D large-kernel (LK) attention module is proposed to address these problems to achieve accurate multi-organ segmentation and tumor segmentation. The advantages of biologically inspired self-attention and convolution are combined in the proposed LK attention module, including local contextual information, long-range dependencies, and channel adaptation. The module also decomposes the LK convolution to optimize the computational cost and can be easily incorporated into CNNs such as U-Net. Comprehensive ablation experiments demonstrated the feasibility of convolutional decomposition and explored the most efficient and effective network design. Among them, the best Mid-type 3D LK attention-based U-Net network was evaluated on CT-ORG and BraTS 2020 datasets, achieving state-of-the-art segmentation performance when compared to avant-garde CNN and Transformer-based methods for medical image segmentation. The performance improvement due to the proposed 3D LK attention module was statistically validated.
Date Issued
2024-07-01
Date Acceptance
2023-02-10
Citation
Cognitive Computation, 2024, 16, pp.2063-2077
ISSN
1866-9956
Publisher
Springer
Start Page
2063
End Page
2077
Journal / Book Title
Cognitive Computation
Volume
16
Copyright Statement
© The Author(s) 2023. This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
License URL
Publication Status
Published
Date Publish Online
2023-02-27