Hierarchical compression of C. elegans locomotion reveals phenotypic differences in the organisation of behaviour
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Published version
Author(s)
Gomez-Marin, A
Stephens, GJ
Brown, AE
Type
Journal Article
Abstract
Regularities in animal behaviour offer insight into the underlying
organisational and functional principles of nervous systems and automated tracking provides the opportunity to extract features
of behaviour directly from large-scale video data. Yet how to effectively analyse such behavioural data remains an open question. Here we explore whether a minimum description length principle can be
exploited to identify meaningful behaviours and phenotypes. We apply
a dictionary compression algorithm to behavioural sequences from
the nematode worm Caenorhabditis elegans freely crawling on an
agar plate both with and without food and during chemotaxis. We find that the motifs identified by the compression algorithm are rare but
relevant for comparisons between worms in different environments, suggesting that hierarchical compression can be a useful step in behaviour analysis. We also use compressibility as a new quantitative phenotype and find that the behaviour of wild-isolated strains of C.
elegans is more compressible than that of the laboratory strain N2 as well as the majority of mutant strains examined. Importantly, in distinction to more conventional phenotypes such as overall motor activity or aggregation behaviour, the increased compressibility of wild isolates is not explained by the loss of function of the gene npr-1, which suggests that erratic locomotion is a laboratory-derived trait with a novel genetic basis. Because hierarchical compression can be applied to any sequence, we anticipate that compressibility can offer insight into the organisation of behaviour in other animals including humans.
organisational and functional principles of nervous systems and automated tracking provides the opportunity to extract features
of behaviour directly from large-scale video data. Yet how to effectively analyse such behavioural data remains an open question. Here we explore whether a minimum description length principle can be
exploited to identify meaningful behaviours and phenotypes. We apply
a dictionary compression algorithm to behavioural sequences from
the nematode worm Caenorhabditis elegans freely crawling on an
agar plate both with and without food and during chemotaxis. We find that the motifs identified by the compression algorithm are rare but
relevant for comparisons between worms in different environments, suggesting that hierarchical compression can be a useful step in behaviour analysis. We also use compressibility as a new quantitative phenotype and find that the behaviour of wild-isolated strains of C.
elegans is more compressible than that of the laboratory strain N2 as well as the majority of mutant strains examined. Importantly, in distinction to more conventional phenotypes such as overall motor activity or aggregation behaviour, the increased compressibility of wild isolates is not explained by the loss of function of the gene npr-1, which suggests that erratic locomotion is a laboratory-derived trait with a novel genetic basis. Because hierarchical compression can be applied to any sequence, we anticipate that compressibility can offer insight into the organisation of behaviour in other animals including humans.
Date Issued
2016-08-31
Date Acceptance
2016-07-04
Citation
Journal of the Royal Society Interface, 2016, 13 (121)
ISSN
1742-5689
Publisher
Royal Society, The
Journal / Book Title
Journal of the Royal Society Interface
Volume
13
Issue
121
Copyright Statement
© 2016 The Authors. Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited.
Subjects
Science & Technology
Multidisciplinary Sciences
Science & Technology - Other Topics
Caenorhabditis elegans
behaviour
genetics
C-ELEGANS
DICTIONARY
DISCOVERY
CIRCUIT
LIGHT
General Science & Technology
MD Multidisciplinary
Publication Status
Published
Article Number
ARTN 20160466