EVV 2DIR: A Novel Approach For Protein Phosphorylation
File(s)
Author(s)
Cheung, Michelle
Type
Thesis
Abstract
The novel Electron-Vibration-Vibration Two-Dimensional InfraRed (EVV 2DIR)
technique is a nonlinear spectroscopic method that measures the vibrational coupling
spectrum in a way analogous to the measurement of spin couplings by 2D NMR
methods. To date, the main focus of this work has been on the development of
EVV 2DIR as a tool for high-throughput, label-free protein identification and absolute
quantification. One of the most promising areas where EVV 2DIR technique can provide
complementary information not available via other established proteomic methods is
for the study of post-translational modifications. This spectroscopy has demonstrated
absolute quantification of phosphorylation levels in peptides, something difficult to
achieve with other methods.
The cyclin-dependent kinase inhibitor p27 is involved in orchestrating a variety of
protein interactions in vivo that are key modulators of cell-cycle progression and that
are often deregulated in cancer. The regulation of p27 is controlled by phosphorylation
on serine, threonine and tyrosine residues thus providing a good model for EVV 2DIR
studies.
technique is a nonlinear spectroscopic method that measures the vibrational coupling
spectrum in a way analogous to the measurement of spin couplings by 2D NMR
methods. To date, the main focus of this work has been on the development of
EVV 2DIR as a tool for high-throughput, label-free protein identification and absolute
quantification. One of the most promising areas where EVV 2DIR technique can provide
complementary information not available via other established proteomic methods is
for the study of post-translational modifications. This spectroscopy has demonstrated
absolute quantification of phosphorylation levels in peptides, something difficult to
achieve with other methods.
The cyclin-dependent kinase inhibitor p27 is involved in orchestrating a variety of
protein interactions in vivo that are key modulators of cell-cycle progression and that
are often deregulated in cancer. The regulation of p27 is controlled by phosphorylation
on serine, threonine and tyrosine residues thus providing a good model for EVV 2DIR
studies.
Version
Open Access
Date Issued
2014-10
Date Awarded
2015-03
Copyright Statement
Attribution NoDerivatives 4.0 International Licence (CC BY-ND)
Advisor
Klug, David
Mann, David
Willison, Keith
Publisher Department
Chemistry
Publisher Institution
Imperial College London
Qualification Level
Doctoral
Qualification Name
Doctor of Philosophy (PhD)