TBI lesion segmentation in head CT: impact of preprocessing and data augmentation
File(s)monteiro2019tbi.pdf (935.98 KB)
Accepted version
Author(s)
Type
Conference Paper
Abstract
Automatic segmentation of lesions in head CT provides keyinformation for patient management, prognosis and disease monitoring.Despite its clinical importance, method development has mostly focusedon multi-parametric MRI. Analysis of the brain in CT is challengingdue to limited soft tissue contrast and its mono-modal nature. We studythe under-explored problem of fine-grained CT segmentation of multiplelesion types (core, blood, oedema) in traumatic brain injury (TBI). Weobserve that preprocessing and data augmentation choices greatly impactthe segmentation accuracy of a neural network, yet these factors arerarely thoroughly assessed in prior work. We design an empirical studythat extensively evaluates the impact of different data preprocessing andaugmentation methods. We show that these choices can have an impactof up to 18% DSC. We conclude that resampling to isotropic resolutionyields improved performance, skull-stripping can be replaced by using theright intensity window, and affine-to-atlas registration is not necessaryif we use sufficient spatial augmentation. Since both skull-stripping andaffine-to-atlas registration are susceptible to failure, we recommend theiralternatives to be used in practice. We believe this is the first work toreport results for fine-grained multi-class segmentation of TBI in CT. Ourfindings may inform further research in this under-explored yet clinicallyimportant task of automatic head CT lesion segmentation.
Date Issued
2020-05-19
Date Acceptance
2019-09-02
Citation
Lecture Notes in Computer Science, 2020, pp.13-22
ISSN
0302-9743
Publisher
Springer Verlag
Start Page
13
End Page
22
Journal / Book Title
Lecture Notes in Computer Science
Copyright Statement
© 2020 The Author(s). The final publication is available at Springer via https://doi.org/10.1007/978-3-030-46640-4_2
Sponsor
Commission of the European Communities
Commission of the European Communities
Identifier
https://link.springer.com/chapter/10.1007%2F978-3-030-46640-4_2
Grant Number
H2020 - 757173
HEALTH-F2-2013-602150
Source
MICCAI Brain Lesion Workshop
Subjects
Artificial Intelligence & Image Processing
Publication Status
Published
Start Date
2019-10-17
Finish Date
2019-10-17
Coverage Spatial
Shenzhen, China
Date Publish Online
2020-05-19