Mocarts: a lightweight radiation transport simulator for easy handling of complex sensing geometries
File(s)CuervoSotoB2016_ISBI2016.pdf (702.18 KB)
Published version
Author(s)
Cuervo-Soto, B
Herrera-Vega, J
Garces-Baez, JADC
Trevino-Palacios, CG
Orihuela-Espina, F
Type
Conference Paper
Abstract
In functional neuroimaging (fNIRS), elaborated sensing geometries pairing multiple light sources and detectors arranged over the tissue surface are needed. A variety of software tools for probing forward models of radiation transport in tissue exist, but their handling of sensing geometries and specification of complex tissue architectures is, most times, cumbersome. In this work, we introduce a lightweight simulator, Monte Carlo Radiation Transport Simulator (MOCARTS) that attends these demands for simplifying specification of tissue architectures and complex sensing geometries. An object-oriented architecture facilitates such goal. The simulator core is evolved from the Monte Carlo Multi-Layer (mcml) tool but extended to support multi-channel simulations. Verification against mcml yields negligible error (RMSE~4-10e-9) over a photon trajectory. Full simulations show concurrent validity of the proposed tool. Finally, the ability of the new software to simulate multi-channel sensing geometries and to define biological tissue models in an intuitive nested-hierarchy way are exemplified.
Date Issued
2016-06-16
Date Acceptance
2016-04-13
Citation
2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI), 2016, pp.377-380
ISBN
978-1-4799-2350-2
ISSN
1945-7928
Publisher
IEEE
Start Page
377
End Page
380
Journal / Book Title
2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI)
Copyright Statement
© 2016 IEEE. Personal use of this material is permitted. Permission from IEEE must be obtained for all other uses, in any current or future media, including reprinting/republishing this material for advertising or promotional purposes, creating new collective works, for resale or redistribution to servers or lists, or reuse of any copyrighted component of this work in other works.
Sponsor
Consejo Nacional de Ciencia y Tecnología (CONACYT) de México
Identifier
http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000386377400091&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=1ba7043ffcc86c417c072aa74d649202
Grant Number
237251
Source
IEEE 13th International Symposium on Biomedical Imaging (ISBI)
Subjects
Science & Technology
Technology
Life Sciences & Biomedicine
Engineering, Biomedical
Radiology, Nuclear Medicine & Medical Imaging
Engineering
Monte Carlo
radiation propagation
sensing geometries
image formation
RECONSTRUCTION
LIGHT
Publication Status
Published
Start Date
2016-04-13
Finish Date
2016-04-16
Coverage Spatial
Prague, Czech Republic