A coarse-grained MARTINI model for mucins
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Published online version
Author(s)
Kanesalingam, Thilakan
Weiand, Erik
Cann, Philippa M
Masen, Marc
Ewen, James P
Type
Journal Article
Abstract
Highly glycosylated proteins known as mucins are the principal components of mucus, the gel-like secretion that protects and lubricates many tissues in the human body. Molecular dynamics (MD) simulations are a useful tool to investigate the nanoscale structure and function of proteins; however, the high molecular weight of mucins makes them a challenging target for atomistic MD simulations. To enable long-time MD simulations of large mucins, we develop and validate new coarse-grained force field parameters within the MARTINI 3 framework for the glycosylated domains of salivary mucin, MUC5B. We use atomistic MD simulations of segments of the protein backbone connected to O-glycans with the CHARMM36m force field to parameterize the bonded parameters. The structural properties of MUC5B from the MD simulations with MARTINI 3, including the radius of gyration, end-to-end distance, and solvent accessible surface area, agree well with the atomistic simulations. Our MARTINI 3 parameters reproduce the bottlebrush structure of MUC5B observed in atomistic MD simulations and previous experiments. The power-law scaling of the radius of gyration with molecular weight is within the range observed in previous experiments of mucins. Accordingly, the MARTINI 3 parameters developed and validated in this study will facilitate accurate and efficient MD simulations of mucins and other glycoproteins for a variety of application areas including food science, drug delivery, and biomaterials.
Date Issued
2025-12-31
Date Acceptance
2025-12-18
Citation
Journal of Chemical Theory and Computation, 2025
ISSN
1549-9618
Publisher
American Chemical Society (ACS)
Journal / Book Title
Journal of Chemical Theory and Computation
Copyright Statement
© 2025 The Authors. Published by American Chemical Society. This publication is licensed under CC-BY 4.0 .
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Publication Status
Published online
Date Publish Online
2025-12-31