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  5. Comparative genome sequence analysis of actinobacillus pleuropneumoniae serovar 8 isolates from Norway, Denmark, and the United Kingdom indicates distinct phylogenetic lineages and differences in distribution of antimicrobial resistance genes
 
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Comparative genome sequence analysis of actinobacillus pleuropneumoniae serovar 8 isolates from Norway, Denmark, and the United Kingdom indicates distinct phylogenetic lineages and differences in distribution of antimicrobial resistance genes
File(s)
fmicb-12-729637.pdf (5.3 MB)
Published version
Author(s)
Cohen, Liza Miriam
Bossé, Janine T
Stegger, Marc
Li, Yanwen
Langford, Paul R
more
Type
Journal Article
Abstract
Actinobacillus pleuropneumoniae is the etiological agent of porcine pleuropneumonia, a disease of major impact on pig health, welfare, and productivity globally. Serovar 8 (APP) is the predominant clinical serovar in Norway and the United Kingdom (UK), and has been isolated from clinical cases in Denmark. The primary objective of this study was to characterize the genetic variability of isolates of A. pleuropneumoniae APP8 in the Norwegian population. The secondary objectives were to determine the within-host variability of APP8; to compare the APP8 bacterial populations in Norway, Denmark, and the UK, including antimicrobial resistance (AMR) gene profiles and to assess the effect of national differences in antimicrobial drug use and restricted animal movement on the occurrence of resistance. Isolates of APP8 from the UK (n=67), Denmark (n=22), and Norway (n=123) collected between 1983 and 2020 were compared using whole genome sequencing. To investigate genetic variability within individual hosts, an additional 104 APP8 isolates from the lungs of six Norwegian pigs were compared. Very low within-host variation was observed (≤ 2 single nucleotide polymorphisms). The phylogeny of 123 Norwegian APP8 isolates from 76 herds revealed some within-herd genetic variation, but substantial geographical clustering. When inferring the relatedness of the three international APP8 collections, the topology highlighted the existence of two distinct monophyletic branches characterized by the Norwegian and UK isolates, respectively. Three Danish isolates were scattered across the UK branch, whereas the remaining 19 Danish isolates clustered in two monophyletic groups nested in the Norwegian branch. Coalescence analysis, performed to estimate the divergences from a common ancestor, indicated a last common ancestor several centuries ago. The phylogenetic analyses also revealed striking differences in occurrence of AMR genes, as these were 23-times more prevalent among the UK isolates than among the Norwegian isolates. An increased understanding of the effects of population strategies is helpful in surveillance and control of infectious diseases.
Date Issued
2021-09-10
Date Acceptance
2021-08-13
Citation
Frontiers in Microbiology, 2021, 12, pp.1-13
URI
http://hdl.handle.net/10044/1/91589
URL
https://www.frontiersin.org/articles/10.3389/fmicb.2021.729637/full
DOI
https://www.dx.doi.org/10.3389/fmicb.2021.729637
ISSN
1664-302X
Publisher
Frontiers Media
Start Page
1
End Page
13
Journal / Book Title
Frontiers in Microbiology
Volume
12
Copyright Statement
© 2021 Cohen, Bossé, Stegger, Li, Langford, Kielland, Klem, Gulliksen, Ranheim, Grøntvedt and Angen. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
License URL
http://creativecommons.org/licenses/by/4.0/
Sponsor
Biotechnology and Biological Sciences Research Council (BBSRC)
Biotechnology and Biological Sciences Research Council
Biotechnology and Biological Sciences Research Council (BBSRC)
Biotechnology and Biological Sciences Research Council
Biotechnology and Biological Sciences Research Council (BBSRC)
Identifier
https://www.frontiersin.org/articles/10.3389/fmicb.2021.729637/full
Grant Number
BB/G018553/1
BB/G018553/1
BB/S002103/1
BB/S019901/1
BB/S005897/1
Subjects
0502 Environmental Science and Management
0503 Soil Sciences
0605 Microbiology
Publication Status
Published
Article Number
729637
Date Publish Online
2021-09-10
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