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A lightweight supercomputing web portal for inferring phylogenetic trees
File(s)
Author(s)
Johnson, David
Meade, Andrew
Alexandrov, Vassil N
Type
Conference Paper
Abstract
In this paper we describe a lightweight Web portal developed for running computational jobs on a IBM JS21 Bladecenter cluster, ThamesBlue, for inferring and analyzing evolutionary histories. We first discuss the need for leveraging HPC as a enabler for molecular phylogenetics research. We go on to describe how the portal is designed to interface with existing open-source software that is typical of a HPC resource configuration, and how by design this portal is generic enough to be portable to other similarly configured compute clusters, and for other applications.
Date Issued
2009-12
Citation
2009, pp.92-95
URI
DOI
ISBN
9781424459469
Publisher
IEEE
Start Page
92
End Page
95
Copyright Statement
© 2009 IEEE. Personal use of this material is permitted. Permission from IEEE must be obtained for all other uses, in any current or future media, including reprinting/republishing this material for advertising or promotional purposes, creating new collective works, for resale or redistribution to servers or lists, or reuse of any copyrighted component of this work in other works
License URL
Description
04/07/13 meb. Accepted version ok to pub.
Source
2009 5th IEEE International Conference on e-Science Workshops
Publication Status
Published
Start Date
2009-12-09
Finish Date
2009-12-11
Coverage Spatial
Oxford, UK