Image-level harmonization of multi-site data using image-and-spatial transformer networks
File(s)2006.16741v1.pdf (1.71 MB)
Accepted version
Author(s)
Type
Conference Paper
Abstract
We investigate the use of image-and-spatial transformer networks (ISTNs) to tackle domain shift in multi-site medical imaging data. Commonly, domain adaptation (DA) is performed with little regard for explainability of the inter-domain transformation and is often conducted at the feature-level in the latent space. We employ ISTNs for DA at the image-level which constrains transformations to explainable appearance and shape changes. As proof-of-concept we demonstrate that ISTNs can be trained adversarially on a classification problem with simulated 2D data. For real-data validation, we construct two 3D brain MRI datasets from the Cam-CAN and UK Biobank studies to investigate domain shift due to acquisition and population differences. We show that age regression and sex classification models trained on ISTN output improve generalization when training on data from one and testing on the other site.
Date Issued
2020-09-29
Date Acceptance
2020-07-01
Citation
2020, pp.710-719
Publisher
Springer
Start Page
710
End Page
719
Copyright Statement
© Springer Nature Switzerland AG 2020. The final publication is available at Springer via https://doi.org/10.1007/978-3-030-59728-3_69
Sponsor
GlaxoSmithKline
Commission of the European Communities
Engineering & Physical Science Research Council (EPSRC)
Identifier
http://arxiv.org/abs/2006.16741v1
Grant Number
H2020 - 757173
EP/P001009/1
Source
23rd International Conference on Medical Image Computing and Computer Assisted Intervention
Subjects
eess.IV
eess.IV
cs.CV
Notes
Accepted at MICCAI 2020
Publication Status
Published
Start Date
2020-10-04
Finish Date
2020-10-08
Coverage Spatial
Lima, Peru
Date Publish Online
2020-09-29