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  4. Photophysics of deoxycytidine and 5-methyldeoxycytidine in solution: a comprehensive picture by quantum mechanical calculations and femtosecond fluorescence spectroscopy
 
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Photophysics of deoxycytidine and 5-methyldeoxycytidine in solution: a comprehensive picture by quantum mechanical calculations and femtosecond fluorescence spectroscopy
File(s)
cyt-jacs-def.pdf (9.03 MB)
Accepted version
Author(s)
Martinez-Fernandez, L
Pepino, AJ
Segarra-Marti, J
Jovaisaite, J
Vaya, I
more
Type
Journal Article
Abstract
The study concerns the relaxation of electronic excited states of the DNA nucleoside deoxycytidine (dCyd) and its methylated analogue 5-methyldeoxycytidine (5mdCyd), known to be involved in the formation of UV-induced lesions of the genetic code. Due to the existence of four closely lying and potentially coupled excited states, the deactivation pathways in these systems are particularly complex and have not been assessed so far. Here, we provide a complete mechanistic picture of the excited state relaxation of dCyd/5mdCyd in three solvents—water, acetonitrile, and tetrahydrofuran—by combining femtosecond fluorescence experiments, addressing the effect of solvent proticity on the relaxation dynamics of dCyd and 5mdCyd for the first time, and two complementary quantum mechanical approaches (CASPT2/MM and PCM/TD-CAM-B3LYP). The lowest energy ππ* state is responsible for the sub-picosecond lifetime observed for dCyd in all the solvents. In addition, computed excited state absorption and transient IR spectra allow one, for the first time, to assign the tens of picoseconds time constant, reported previously, to a dark state (nOπ*) involving the carbonyl lone pair. A second low-lying dark state, involving the nitrogen lone pair (nNπ*), does significantly participate in the excited state dynamics. The 267 nm excitation of dCyd leads to a non-negligible population of the second bright ππ* state, which affects the dynamics, acting mainly as a “doorway” state for the nOπ* state. The solvent plays a key role governing the interplay between the different excited states; unexpectedly, water favors population of the dark states. In the case of 5mdCyd, an energy barrier present on the main nonradiative decay route explains the 6-fold lengthening of the excited state lifetime compared to that of dCyd, observed for all the examined solvents. Moreover, C5-methylation destabilizes both nOπ* and nNπ* dark states, thus preventing them from being populated.
Date Issued
2017-05-17
Date Acceptance
2017-02-02
Citation
Journal of the American Chemical Society, 2017, 139 (23), pp.7780-7791
URI
http://hdl.handle.net/10044/1/58242
DOI
https://www.dx.doi.org/10.1021/jacs.7b01145
ISSN
1520-5126
Publisher
American Chemical Society
Start Page
7780
End Page
7791
Journal / Book Title
Journal of the American Chemical Society
Volume
139
Issue
23
Copyright Statement
© 2017 American Chemical Society. This document is the Accepted Manuscript version of a Published Work that appeared in final form in the Journal of the American Chemical Society, after peer review and technical editing by the publisher. To access the final edited and published work see https://dx.doi.org/10.1021/jacs.7b01145
Identifier
http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000403631200025&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=1ba7043ffcc86c417c072aa74d649202
Subjects
Science & Technology
Physical Sciences
Chemistry, Multidisciplinary
Chemistry
EXCITED-STATE DYNAMICS
2ND-ORDER PERTURBATION-THEORY
CYTOSINE DERIVATIVES
TRANSIENT ABSORPTION
RELAXATION DYNAMICS
ULTRAFAST DECAY
NUCLEIC-ACIDS
GAS-PHASE
RNA BASES
DNA
Publication Status
Published
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