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  5. Exploring microRNA Biology using Integrative Bioinformatics
 
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Exploring microRNA Biology using Integrative Bioinformatics
File(s)
Pomyen-Y-2015-PhD-Thesis.pdf (44.29 MB)
Thesis
Author(s)
Pomyen, Yotsawat
Type
Thesis or dissertation
Abstract
Deregulation of energy metabolism is one of the emerging hallmarks of cancer required for proliferation and metastasis. MicroRNAs are small RNA molecules that have crucial roles in the regulation of biological processes in organisms, including metabolism. Due to recent discovery of miRNAs in humans, roles of miRNAs in metabolism of tumour cells, and effects these have on cancer patients, are still obscure and in need of expansion. Currently, experimental and computational data on the miRNAs are being analysed by a wide range of statistical methods; however, these methods in their original forms posses many limitations. Therefore, new ways of utilising these statistical methods are needed in order to unravel the roles of miRNAs in cancer metabolism. In this thesis, the roles of a specific miRNA, miR-22, and the three metabolic target genes were investigated through the use of classical statistical methods, revealed that miR-22, the metabolic target genes, and the interactions between them, were beneficial to survival outcome of breast cancer patients. Furthermore, novel combinations of the conventional statistical methods were invented in order to investigate the global miRNA regulations on metabolic target genes. These new procedures were demonstrated by using publicly available data sets. In one analysis, it was found that miRNAs could be divided into six clusters according to the metabolic target genes through a novel combination of statistical methods. A new statistical method was also invented to provide a generalised means to test for clustering based on sets of correlations.
Version
Open Access
Date Issued
2014-09
Date Awarded
2015-02
URI
http://hdl.handle.net/10044/1/24774
DOI
https://doi.org/10.25560/24774
Advisor
Keun, Hector
Ebbels, Timothy
Sponsor
Thailand
Publisher Department
Surgery & Cancer
Publisher Institution
Imperial College London
Qualification Level
Doctoral
Qualification Name
Doctor of Philosophy (PhD)
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