MVSE: An R-package that estimates a climate-driven mosquito-borne viral suitability index
Author(s)
Type
Journal Article
Abstract
Viruses, such as dengue, Zika, yellow fever and chikungunya, depend on mosquitoes for transmission. Their epidemics typically present periodic patterns, linked to the underlying mosquito population dynamics, which are known to be driven by natural climate fluctuations. Understanding how climate dictates the timing and potential of viral transmission is essential for preparedness of public health systems and design of control strategies. While various alternative approaches have been proposed to estimate local transmission potential of such viruses, few open‐source, ready to use and freely available software tools exist.
We developed the M osquito‐borne V iral S uitability E stimator (MVSE ) software package for the R programming environment. MVSE estimates the index P, a novel suitability index based on a climate‐driven mathematical expression for the basic reproductive number of mosquito‐borne viruses. By accounting for local humidity and temperature, as well as viral, vector and human priors, the index P can be estimated for specific host and viral species in different regions of the globe.
We describe the background theory, empirical support and biological interpretation of the index P. Using real‐world examples spanning multiple epidemiological contexts, we further demonstrate MVSE 's basic functionality, research and educational potentials.
We developed the M osquito‐borne V iral S uitability E stimator (MVSE ) software package for the R programming environment. MVSE estimates the index P, a novel suitability index based on a climate‐driven mathematical expression for the basic reproductive number of mosquito‐borne viruses. By accounting for local humidity and temperature, as well as viral, vector and human priors, the index P can be estimated for specific host and viral species in different regions of the globe.
We describe the background theory, empirical support and biological interpretation of the index P. Using real‐world examples spanning multiple epidemiological contexts, we further demonstrate MVSE 's basic functionality, research and educational potentials.
Date Issued
2019-08-01
Date Acceptance
2019-04-23
Citation
Methods in Ecology and Evolution, 2019, 10 (8), pp.1357-1370
ISSN
2041-210X
Publisher
Wiley
Start Page
1357
End Page
1370
Journal / Book Title
Methods in Ecology and Evolution
Volume
10
Issue
8
Copyright Statement
© 2019 The Authors. Methods in Ecology and Evolution published by John Wiley & Sons Ltd on behalf of British Ecological Society.
This is an open access article under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
This is an open access article under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
Identifier
http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000479111100022&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=1ba7043ffcc86c417c072aa74d649202
Subjects
Science & Technology
Life Sciences & Biomedicine
Ecology
Environmental Sciences & Ecology
community ecology
community ecological modelling
disease ecology
disease ecological modelling
microbial ecology
mosquitoes
mosquito-borne Viral Suitability Estimator
viruses
AEDES-AEGYPTI
ZIKA VIRUS
JAPANESE ENCEPHALITIS
WEST-NILE
DENGUE
TEMPERATURE
CULICIDAE
OUTBREAK
DIPTERA
VECTOR
Publication Status
Published
Date Publish Online
2019-06-19