Fast multiple landmark localisation using a patch-based iterative network
File(s)MICCAI18.pdf (1.46 MB)
Accepted version
Author(s)
Type
Conference Paper
Abstract
We propose a new Patch-based Iterative Network (PIN) for fast and accurate
landmark localisation in 3D medical volumes. PIN utilises a Convolutional
Neural Network (CNN) to learn the spatial relationship between an image patch
and anatomical landmark positions. During inference, patches are repeatedly
passed to the CNN until the estimated landmark position converges to the true
landmark location. PIN is computationally efficient since the inference stage
only selectively samples a small number of patches in an iterative fashion
rather than a dense sampling at every location in the volume. Our approach
adopts a multi-task learning framework that combines regression and
classification to improve localisation accuracy. We extend PIN to localise
multiple landmarks by using principal component analysis, which models the
global anatomical relationships between landmarks. We have evaluated PIN using
72 3D ultrasound images from fetal screening examinations. PIN achieves
quantitatively an average landmark localisation error of 5.59mm and a runtime
of 0.44s to predict 10 landmarks per volume. Qualitatively, anatomical 2D
standard scan planes derived from the predicted landmark locations are visually
similar to the clinical ground truth.
landmark localisation in 3D medical volumes. PIN utilises a Convolutional
Neural Network (CNN) to learn the spatial relationship between an image patch
and anatomical landmark positions. During inference, patches are repeatedly
passed to the CNN until the estimated landmark position converges to the true
landmark location. PIN is computationally efficient since the inference stage
only selectively samples a small number of patches in an iterative fashion
rather than a dense sampling at every location in the volume. Our approach
adopts a multi-task learning framework that combines regression and
classification to improve localisation accuracy. We extend PIN to localise
multiple landmarks by using principal component analysis, which models the
global anatomical relationships between landmarks. We have evaluated PIN using
72 3D ultrasound images from fetal screening examinations. PIN achieves
quantitatively an average landmark localisation error of 5.59mm and a runtime
of 0.44s to predict 10 landmarks per volume. Qualitatively, anatomical 2D
standard scan planes derived from the predicted landmark locations are visually
similar to the clinical ground truth.
Date Issued
2018-09-26
Date Acceptance
2018-05-25
Citation
Lecture Notes in Computer Science, 2018
ISSN
0302-9743
Publisher
Springer Verlag
Journal / Book Title
Lecture Notes in Computer Science
Copyright Statement
© Springer Nature Switzerland AG 2018. The final publication is available at Springer via https://doi.org/10.1007/978-3-030-00928-1_64
Sponsor
Wellcome Trust/EPSRC
Wellcome Trust
Engineering & Physical Science Research Council (E
Nvidia
Engineering & Physical Science Research Council (E
Wellcome Trust
Identifier
https://link.springer.com/chapter/10.1007%2F978-3-030-00928-1_64
Grant Number
NS/A000025/1
RTJ5557761
RTJ5557761-1
Nvidia Hardware donation
RTJ5557761-1
PO :RTJ5557761-1
Source
21st International Conference on Medical Image Computing and Computer Assisted Intervention
Subjects
Science & Technology
Technology
Computer Science, Theory & Methods
Imaging Science & Photographic Technology
Computer Science
cs.CV
cs.CV
Artificial Intelligence & Image Processing
Publication Status
Published
Start Date
2018-09-16
Finish Date
2018-09-20
Coverage Spatial
Granada, Spain
Date Publish Online
2018-09-26