Multiscale model of electronic behavior and localization in stretched dry DNA
File(s)0704.0660v1.pdf (1.49 MB)
Accepted version
Author(s)
Barnett, RL
Maragakis, P
Turner, A
Fyta, M
Kaxiras, E
Type
Journal Article
Abstract
When the DNA double helix is subjected to external forces it can stretch elastically to elongations reaching 100% of its natural length. These distortions, imposed at the mesoscopic or macroscopic scales, have a dramatic effect on electronic properties at the atomic scale and on electrical transport along DNA. Accordingly, a multiscale approach is necessary to capture the electronic behavior of the stretched DNA helix. To construct such a model, we begin with accurate density-functional-theory calculations for electronic states in DNA bases and base pairs in various relative configurations encountered in the equilibrium and stretched forms. These results are complemented by semi-empirical quantum mechanical calculations for the states of a small size [18 base pair poly(CG)–poly(CG)] dry, neutral DNA sequence, using previously published models for stretched DNA. The calculated electronic states are then used to parametrize an effective tight-binding model that can describe electron hopping in the presence of environmental effects, such as the presence of stray water molecules on the backbone or structural features of the substrate. These effects introduce disorder in the model hamiltonian which leads to electron localization. The localization length is smaller by several orders of magnitude in stretched DNA relative to that in the unstretched structure.
Date Issued
2007-07-17
Date Acceptance
2007-04-02
Citation
Journal of Materials Science, 2007, 42 (21), pp.8894-8903
ISSN
0022-2461
Publisher
Springer Verlag
Start Page
8894
End Page
8903
Journal / Book Title
Journal of Materials Science
Volume
42
Issue
21
Copyright Statement
© 2007 Springer Science+Business Media, LLC. The final publication is available at https://dx.doi.org/10.1007/s10853-007-1901-6
Subjects
Science & Technology
Technology
Materials Science, Multidisciplinary
Materials Science
LAMBDA-DNA
ELECTRICAL-TRANSPORT
INSULATING BEHAVIOR
MOLECULES
DENSITY
RANGE
PSEUDOPOTENTIALS
SYSTEMS
CONDUCTIVITY
DIFFUSION
cond-mat.mtrl-sci
cond-mat.str-el
09 Engineering
03 Chemical Sciences
Materials
Publication Status
Published