Receptive field vectors of genetically-identified retinal ganglion cells reveal cell-type-dependent visual functions
Author(s)
Katz, ML
Viney, TJ
Nikolic, K
Type
Journal Article
Abstract
Sensory stimuli are encoded by diverse kinds of neurons but the identities of the recorded neurons that are studied are often unknown. We explored in detail the firing patterns of eight previously defined genetically-identified retinal ganglion cell (RGC) types from a single transgenic mouse line. We first introduce a new technique of deriving receptive field vectors (RFVs) which utilises a modified form of mutual information (“Quadratic Mutual Information”). We analysed the firing patterns of RGCs during presentation of short duration (~10 second) complex visual scenes (natural movies). We probed the high dimensional space formed by the visual input for a much smaller dimensional subspace of RFVs that give the most information about the response of each cell. The new technique is very efficient and fast and the derivation of novel types of RFVs formed by the natural scene visual input was possible even with limited numbers of spikes per cell. This approach enabled us to estimate the 'visual memory' of each cell type and the corresponding receptive field area by calculating Mutual Information as a function of the number of frames and radius. Finally, we made predictions of biologically relevant functions based on the RFVs of each cell type. RGC class analysis was complemented with results for the cells’ response to simple visual input in the form of black and white spot stimulation, and their classification on several key physiological metrics. Thus RFVs lead to predictions of biological roles based on limited data and facilitate analysis of sensory-evoked spiking data from defined cell types.
Date Issued
2016-02-04
Date Acceptance
2016-01-07
Citation
PLOS One, 2016, 11 (2)
ISSN
1932-6203
Publisher
Public Library of Science
Journal / Book Title
PLOS One
Volume
11
Issue
2
Copyright Statement
© 2016 Katz et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
License URL
Sponsor
Engineering & Physical Science Research Council (EPSRC)
Commission of the European Communities
Biotechnology and Biological Sciences Research Council (BBSRC)
Biotechnology and Biological Sciences Research Cou
Engineering & Physical Science Research Council (EPSRC)
Grant Number
EP/H024581/1
270324
BB/L018268/1
4020012831
EP/N002474/1
Subjects
Science & Technology
Multidisciplinary Sciences
Science & Technology - Other Topics
MAMMALIAN RETINA
MOUSE RETINA
MORPHOLOGICAL CLASSIFICATION
NEURAL RESPONSES
NATURAL SCENES
ORGANIZATION
MELANOPSIN
DIVERSITY
MOTION
POPULATIONS
General Science & Technology
MD Multidisciplinary
Publication Status
Published
Article Number
e0147738