Stability for inference with persistent homology rank functions
Author(s)
Wang, Qiquan
Garcia-Redondo, Ines
Faugere, Pierre
Henselman-Petrusek, Gregory
Monod, Anthea
Type
Journal Article
Abstract
Persistent homology barcodes and diagrams are a cornerstone of topological data analysis that capture the “shape” of a wide range of complex data structures, such as point clouds, networks, and functions. However, their use in statistical settings is challenging due to their complex geometric structure. In this paper, we revisit the persistent homology rank function, which is mathematically equivalent to a barcode and persistence diagram, as a tool for statistics and machine learning. Rank functions, being functions, enable the direct application of the statistical theory of functional data analysis (FDA)—a domain of statistics adapted for data in the form of functions. A key challenge they present over barcodes in practice, however, is their lack of stability—a property that is crucial to validate their use as a faithful representation of the data and therefore a viable summary statistic. In this paper, we fill this gap by deriving two stability results for persistent homology rank functions under a suitable metric for FDA integration. We then study the performance of rank functions in functional inferential statistics and machine learning on real data applications, in both single and multiparameter persistent homology. We find that the use of persistent homology captured by rank functions offers a clear improvement over existing non-persistence-based approaches.
Date Issued
2024-08
Date Acceptance
2024-07-01
Citation
Computer Graphics Forum: the international journal of the Eurographics Association, 2024, 43 (5)
ISSN
0167-7055
Publisher
Wiley
Journal / Book Title
Computer Graphics Forum: the international journal of the Eurographics Association
Volume
43
Issue
5
Copyright Statement
© 2024 The Authors. Computer Graphics Forum published by Eurographics - The European Association for Computer Graphics and John Wiley & Sons Ltd.
This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
License URL
Identifier
https://onlinelibrary.wiley.com/doi/10.1111/cgf.15142
Subjects
<bold>CCS Concepts</bold>
center dot <bold>General and reference</bold> -> Performance
center dot <bold>Mathematics of computing</bold> -> Algebraic topology
center dot <bold>Theory of computation</bold> -> Computational geometry
COMPONENT ANALYSIS
Computer Science
Computer Science, Software Engineering
DISTANCE
Science & Technology
SIZE FUNCTIONS
Technology
Publication Status
Published
Article Number
e15142
Date Publish Online
2024-07-31