Regulatory perturbations of ribosome allocation in bacteria reshape the growth proteome with a trade-off in adaptation capacity
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Published version
Author(s)
Hidalgo, David
Martinez-Ortiz, Cesar A
Palsson, Bernhard O
Jimenez, Jose
Utrilla, Jose
Type
Journal Article
Abstract
Bacteria regulate their cellular resource allocation to enable fast growth-adaptation to a variety of environmental niches. We studied the ribosomal allocation, growth, and expression profiles of two sets of fast-growing mutants of Escherichia coli K-12 MG1655. Mutants with only three of the seven copies of ribosomal RNA operons grew faster than the wild-type strain in minimal media and show similar phenotype to previously studied fast-growing rpoB mutants. Comparing these two different regulatory perturbations (rRNA promoters or rpoB mutations), we show how they reshape the proteome for growth with a concomitant fitness cost. The fast-growing mutants shared downregulation of hedging functions and upregulated growth functions. They showed longer diauxic shifts and reduced activity of gluconeogenic promoters during glucose-acetate shifts, suggesting reduced availability of the RNA polymerase for expressing hedging proteome. These results show that the regulation of ribosomal allocation underlies the growth/hedging phenotypes obtained from laboratory evolution experiments.
Date Issued
2022-03-18
Date Acceptance
2022-02-03
Citation
iScience, 2022, 25 (3)
ISSN
2589-0042
Publisher
Cell Press
Journal / Book Title
iScience
Volume
25
Issue
3
Copyright Statement
© 2022 The Authors.
This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/)
This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/)
License URL
Sponsor
Royal Society
The Royal Society
Identifier
https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000773615400010&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=1ba7043ffcc86c417c072aa74d649202
Grant Number
NA160328
NA160328
Subjects
Science & Technology
Multidisciplinary Sciences
Science & Technology - Other Topics
ESCHERICHIA-COLI
GENE-EXPRESSION
READ ALIGNMENT
RNA OPERONS
EVOLUTION
STRAINS
Publication Status
Published
Article Number
ARTN 103879