Towards Accurate Simulation of Two-Dimensional Electronic Spectroscopy
File(s)TCC_chapter_rev_l.pdf (1.76 MB)
Accepted version
Author(s)
Segarra-Marti, Javier
Mukamel, Shaul
Garavelli, Marco
Nenov, Artur
Rivalta, Ivan
Type
Journal Article
Abstract
We introduce the basic concepts of two-dimensional electronic spectroscopy (2DES) and a general theoretical framework adopted to calculate, from first principles, the nonlinear response of multi-chromophoric systems in realistic environments. Specifically, we focus on UV-active chromophores representing the building blocks of biological systems, from proteins to nucleic acids, describing our progress in developing computational tools and protocols for accurate simulation of their 2DUV spectra. The roadmap for accurate 2DUV spectroscopy simulations is illustrated starting with benchmarking of the excited-state manifold of the chromophoric units in a vacuum, which can be used for building exciton Hamiltonians for large-scale applications or as a reference for first-principles simulations with reduced computational cost, enabling treatment of minimal (still realistic) multi-chromophoric model systems. By adopting a static approximation that neglects dynamic processes such as spectral diffusion and population transfer, we show how 2DUV is able to characterize the ground-state conformational space of dinucleosides and small peptides comprising dimeric chromophoric units (in their native environment) by tracking inter-chromophoric electronic couplings. Recovering the excited-state coherent vibrational dynamics and population transfers, we observe a remarkable agreement between the predicted 2DUV spectra of the pyrene molecule and the experimental results. These results further led to theoretical studies of the excited-state dynamics in a solvated dinucleoside system, showing that spectroscopic fingerprints of long-lived excited-state minima along the complex photoinduced decay pathways of DNA/RNA model systems can be simulated at a reasonable computational cost. Our results exemplify the impact of accurate simulation of 2DES spectra in revealing complex physicochemical properties of fundamental biological systems and should trigger further theoretical developments as well as new experiments.
Date Issued
2018-06-01
Date Acceptance
2018-04-24
Citation
TOPICS IN CURRENT CHEMISTRY, 2018, 376 (3)
ISSN
2365-0869
Publisher
SPRINGER INTERNATIONAL PUBLISHING AG
Journal / Book Title
TOPICS IN CURRENT CHEMISTRY
Volume
376
Issue
3
Copyright Statement
© 2018 Springer International Publishing AG, part of Springer Nature. The final publication is available at https://dx.doi.org/10.1007/s41061-018-0201-8
Identifier
http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000434142700001&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=1ba7043ffcc86c417c072aa74d649202
Subjects
Science & Technology
Physical Sciences
Chemistry, Multidisciplinary
Chemistry
Nonlinear electronic spectroscopy
Theoretical simulations
Wavefunction methods
QM/MM computations
DNA/RNA nucleobases
Aromatic amino acids
COHERENT MULTIDIMENSIONAL SPECTROSCOPY
FOURIER-TRANSFORM SPECTROSCOPY
2ND-ORDER PERTURBATION-THEORY
DENSITY-FUNCTIONAL THEORY
EXCITED-STATE DYNAMICS
AB-INITIO SIMULATIONS
OPTICAL SPECTROSCOPY
TRANSIENT ABSORPTION
INTERNAL-CONVERSION
GAS-PHASE
Publication Status
Published
Article Number
ARTN 24
Date Publish Online
2018-06-01