Autonomous learning of generative models with chemical reaction network ensembles
Author(s)
Poole, William
Ouldridge, Thomas
Gopalkrishnan, Manoj
Type
Journal Article
Abstract
Can a micron sized sack of interacting molecules autonomously learn an internal
model of a complex and fluctuating environment? We draw insights from control
theory, machine learning theory, chemical reaction network theory, and statistical
physics to develop a general architecture whereby a broad class of chemical systems
can autonomously learn complex distributions. Our construction takes the form of
a chemical implementation of machine learning’s optimization workhorse: gradient
descent on the relative entropy cost function which we demonstrate can be viewed
as a form of integral feedback control. We show how this method can be applied to
optimize any detailed balanced chemical reaction network and that the construction
is capable of using hidden units to learn complex distributions.
model of a complex and fluctuating environment? We draw insights from control
theory, machine learning theory, chemical reaction network theory, and statistical
physics to develop a general architecture whereby a broad class of chemical systems
can autonomously learn complex distributions. Our construction takes the form of
a chemical implementation of machine learning’s optimization workhorse: gradient
descent on the relative entropy cost function which we demonstrate can be viewed
as a form of integral feedback control. We show how this method can be applied to
optimize any detailed balanced chemical reaction network and that the construction
is capable of using hidden units to learn complex distributions.
Date Issued
2025-01-01
Date Acceptance
2024-10-29
Citation
Journal of the Royal Society Interface, 2025, 22 (222)
ISSN
1742-5662
Publisher
The Royal Society
Journal / Book Title
Journal of the Royal Society Interface
Volume
22
Issue
222
Copyright Statement
© 2025 The Authors. Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited.
License URL
Identifier
10.1098/rsif.2024.0373
Subjects
Life Sciences-Physics interface biophysics
biomathematics
biocomplexity chemical reaction network
Boltzmann machine
molecular programming
generative models
gradient descent
feedback control
Publication Status
Published
Article Number
20240373
Date Publish Online
2025-01-22