Duplex specific nuclease-amplified detection of microRNA using compact quantum dot-DNA conjugates
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Published version
Author(s)
Type
Journal Article
Abstract
Advances in nanotechnology have provided new opportunities for the design of next-generation nucleic acid biosensors and diagnostics. Indeed, combining advances in functional nanoparticles, DNA nanotechnology, and nuclease-enzyme-based amplification can give rise to new assays with advantageous properties. In this work, we developed a microRNA (miRNA) assay using bright fluorescent quantum dots (QDs), simple DNA probes, and the enzyme duplex-specific nuclease. We employed an isothermal target-recycling mechanism, where a single miRNA target triggers the cleavage of many DNA signal probes. The incorporation of DNA-functionalized QDs enabled a quantitative fluorescent readout, mediated by Förster resonance energy transfer (FRET)-based interaction with the DNA signal probes. Our approach splits the reaction in two, performing the enzyme-mediated amplification and QD-based detection steps separately such that each reaction could be optimized for performance of the active components. Target recycling gave ca. 3 orders of magnitude amplification, yielding highly sensitive detection with a limit of 42 fM (or 1.2 amol) of miR-148, with excellent selectivity versus mismatched sequences and other miRNAs. Furthermore, we used an alternative target (miR-21) and FRET pair for direct and absolute quantification of miR-21 in RNA extracts from human cancer and normal cell lines.
Date Issued
2018-08-29
Date Acceptance
2018-07-31
Citation
ACS Applied Materials and Interfaces, 2018, 10 (34), pp.28290-28300
ISSN
1944-8244
Publisher
American Chemical Society
Start Page
28290
End Page
28300
Journal / Book Title
ACS Applied Materials and Interfaces
Volume
10
Issue
34
Copyright Statement
© 2018 American Chemical Society. This is an open access article published under a Creative Commons Attribution (CC-BY) License, which permits unrestricted use, distribution and reproduction in any medium, provided the author and source are cited.
Sponsor
Engineering & Physical Science Research Council (E
Engineering & Physical Science Research Council (EPSRC)
Commission of the European Communities
Grant Number
EP/K031953/1
EP/K020641/1
ERC-2013-CoG-616417
Subjects
Science & Technology
Technology
Nanoscience & Nanotechnology
Materials Science, Multidisciplinary
Science & Technology - Other Topics
Materials Science
biosensing
miRNA
quantum dots
FRET
target-recycling
isothermal amplification
RESONANCE ENERGY-TRANSFER
SENSITIVE DETECTION
GOLD NANOPARTICLES
MOLECULAR BEACON
HUMAN CANCERS
LABEL-FREE
ONE-STEP
AMPLIFICATION
ASSAY
FLUORESCENCE
0904 Chemical Engineering
0303 Macromolecular And Materials Chemistry
0306 Physical Chemistry (Incl. Structural)
Publication Status
Published
Date Publish Online
2018-08-16