CHOGlycoNET: comprehensive glycosylation reaction network for CHO cells
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Published version
Author(s)
Kotidis, Pavlos
Donini, Roberto
Arnsdorf, Johnny
Hansen, Anders Holmgaard
Voldborg, Bjorn Gunnar Rude
Type
Journal Article
Abstract
Chinese hamster ovary (CHO) cells are extensively used for the production of glycoprotein therapeutics proteins, for which N-linked glycans are a critical quality attribute due to their influence on activity and immunogenicity. Manipulation of protein glycosylation is commonly achieved through cell or process engineering, which are often guided by mathematical models. However, each study considers a unique glycosylation reaction network that is tailored around the cell line and product at hand. Herein, we use 200 glycan datasets for both recombinantly produced and native proteins from different CHO cell lines to reconstruct a comprehensive reaction network, CHOGlycoNET, based on the individual minimal reaction networks describing each dataset. CHOGlycoNET is used to investigate the distribution of mannosidase and glycosyltransferase enzymes in the Golgi apparatus and identify key network reactions using machine learning and dimensionality reduction techniques. CHOGlycoNET can be used for accelerating glycomodel development and predicting the effect of glycoengineering strategies. Finally, CHOGlycoNET is wrapped in a SBML file to be used as a standalone model or in combination with CHO cell genome scale models.
Date Issued
2023-03
Date Acceptance
2022-12-27
Citation
Metabolic Engineering, 2023, 76, pp.87-96
ISSN
1096-7176
Publisher
Elsevier
Start Page
87
End Page
96
Journal / Book Title
Metabolic Engineering
Volume
76
Copyright Statement
1096-7176/© 2023 The Authors. Published by Elsevier Inc. on behalf of International Metabolic Engineering Society. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
License URL
Identifier
https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000927440500001&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=1ba7043ffcc86c417c072aa74d649202
Subjects
Science & Technology
Life Sciences & Biomedicine
Biotechnology & Applied Microbiology
Protein glycosylation
Chinese hamster ovary cells
Glycoengineering
Systems glycobiology
Publication Status
Published
Date Publish Online
2023-01-04