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  4. A three-node Turing gene circuit forms periodic spatial patterns in bacteria
 
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A three-node Turing gene circuit forms periodic spatial patterns in bacteria
File(s)
PIIS2405471224003119.pdf (4.38 MB)
Published version
Author(s)
Tica, Jure
Oliver Huidobro, Martina
Zhu, Tong
Wachter, George
Pazuki, Roozbeh
more
Type
Journal Article
Abstract
Turing patterns are self-organizing systems that can form spots, stripes, or labyrinths. Proposed examples in tissue organization include zebrafish pigmentation, digit spacing, and many others. The theory of Turing patterns in biology has been debated because of their stringent fine-tuning requirements, where patterns only occur within a small subset of parameters. This has complicated the engineering of synthetic Turing gene circuits from first principles, although natural genetic Turing networks have been identified. Here, we engineered a synthetic genetic reaction-diffusion system where three nodes interact according to a non-classical Turing network with improved parametric robustness. The system reproducibly generated stationary, periodic, concentric stripe patterns in growing E. coli colonies. A partial differential equation model reproduced the patterns, with a Turing parameter regime obtained by fitting to experimental data. Our synthetic Turing system can contribute to nanotechnologies, such as patterned biomaterial deposition, and provide insights into developmental patterning programs. A record of this paper’s transparent peer review process is included in the supplemental information.
Date Issued
2024-12-18
Date Acceptance
2024-11-09
Citation
Cell Systems, 2024, 15 (12), pp.1123-1132.e3
URI
http://hdl.handle.net/10044/1/116018
URL
https://doi.org/10.1016/j.cels.2024.11.002
DOI
https://www.dx.doi.org/10.1016/j.cels.2024.11.002
ISSN
2405-4720
Publisher
Elsevier (Cell Press)
Start Page
1123
End Page
1132.e3
Journal / Book Title
Cell Systems
Volume
15
Issue
12
Copyright Statement
Copyright: © 2024 The Author(s). Published by Elsevier Inc. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
License URL
https://creativecommons.org/licenses/by/4.0/
Identifier
https://doi.org/10.1016/j.cels.2024.11.002
Publication Status
Published
Date Publish Online
2024-12-02
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