dynamicSDM: An R package for species geographical distribution and abundance modelling at high spatiotemporal resolution
File(s)DobsonEtAl2023_Methods Ecol Evol - 2023dynamicSDM.pdf (7.04 MB)
Published version
Author(s)
Type
Journal Article
Abstract
Species distribution models (SDM) are widely applied to understand changing species geographical distribution and abundance patterns. However, existing SDM tools are inherently static and inadequate for modelling species distributions that are driven by dynamic environmental conditions.
dynamicSDM provides novel tools that explicitly consider the temporal dimension at key SDM stages, including functions for: (a) Cleaning and filtering species occurrence records by spatial and temporal qualities; (b) Generating pseudo-absence records through space and time; (c) Extracting spatiotemporally buffered explanatory variables; (d) Fitting SDMs whilst accounting for temporal biases and autocorrelation and (e) Projecting intra- and inter- annual geographical distributions and abundances at high spatiotemporal resolution.
Package functions have been designed to be: flexible for targeting specific study species; compatible with other SDM tools; and, by utilising Google Earth Engine and Google Drive, to have low computing power and storage needs. We illustrate dynamicSDM functions with an example of a nomadic bird in southern Africa, the red-billed quelea Quelea quelea.
As dynamicSDM functions are flexible and easily applied, we suggest that these tools could be readily applied to other taxa and systems globally.
dynamicSDM provides novel tools that explicitly consider the temporal dimension at key SDM stages, including functions for: (a) Cleaning and filtering species occurrence records by spatial and temporal qualities; (b) Generating pseudo-absence records through space and time; (c) Extracting spatiotemporally buffered explanatory variables; (d) Fitting SDMs whilst accounting for temporal biases and autocorrelation and (e) Projecting intra- and inter- annual geographical distributions and abundances at high spatiotemporal resolution.
Package functions have been designed to be: flexible for targeting specific study species; compatible with other SDM tools; and, by utilising Google Earth Engine and Google Drive, to have low computing power and storage needs. We illustrate dynamicSDM functions with an example of a nomadic bird in southern Africa, the red-billed quelea Quelea quelea.
As dynamicSDM functions are flexible and easily applied, we suggest that these tools could be readily applied to other taxa and systems globally.
Date Issued
2023-05
Date Acceptance
2023-03-10
Citation
Methods in Ecology and Evolution, 2023, 14 (5), pp.1190-1199
ISSN
2041-210X
Publisher
Wiley Open Access
Start Page
1190
End Page
1199
Journal / Book Title
Methods in Ecology and Evolution
Volume
14
Issue
5
Copyright Statement
© 2023 The Authors. Methods in Ecology and Evolution published by John Wiley & Sons Ltd on behalf of British Ecological Society.
This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
License URL
Identifier
https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000956578900001&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=a2bf6146997ec60c407a63945d4e92bb
Subjects
dynamic ecological niche modelling
dynamic species abundance modelling
dynamic species distribution modelling
Ecology
Environmental Sciences & Ecology
Life Sciences & Biomedicine
QUELEA QUELEA-QUELEA
R package
Science & Technology
spatial ecology
spatial or time-series
statistics
Publication Status
Published
Date Publish Online
2023-03-26