A framework for Monte Carlo based multiple testing
File(s)framework(1).pdf (285.85 KB)
Accepted version
Author(s)
Gandy, A
Hahn, G
Type
Journal Article
Abstract
We are concerned with multiple testing in the setting where p-values are
unknown and can only be approximated using Monte Carlo simulation. This
scenario occurs widely in practice. We are interested in obtaining the same
rejections and non-rejections as the ones obtained if the p-values for all
hypotheses had been available. The present article introduces a framework for
this scenario by providing a generic algorithm for a general multiple testing
procedure. We establish conditions which guarantee that the rejections and
non-rejections obtained through Monte Carlo simulations are identical to the
ones obtained with the p-values. Our framework is applicable to a general class
of step-up and step-down procedures which includes many established multiple
testing corrections such as the ones of Bonferroni, Holm, Sidak, Hochberg or
Benjamini-Hochberg. Moreover, we show how to use our framework to improve
algorithms available in the literature in such a way as to yield theoretical
guarantees on their results. These modifications can easily be implemented in
practice and lead to a particular way of reporting multiple testing results as
three sets together with an error bound on their correctness, demonstrated
exemplarily using a real biological dataset.
unknown and can only be approximated using Monte Carlo simulation. This
scenario occurs widely in practice. We are interested in obtaining the same
rejections and non-rejections as the ones obtained if the p-values for all
hypotheses had been available. The present article introduces a framework for
this scenario by providing a generic algorithm for a general multiple testing
procedure. We establish conditions which guarantee that the rejections and
non-rejections obtained through Monte Carlo simulations are identical to the
ones obtained with the p-values. Our framework is applicable to a general class
of step-up and step-down procedures which includes many established multiple
testing corrections such as the ones of Bonferroni, Holm, Sidak, Hochberg or
Benjamini-Hochberg. Moreover, we show how to use our framework to improve
algorithms available in the literature in such a way as to yield theoretical
guarantees on their results. These modifications can easily be implemented in
practice and lead to a particular way of reporting multiple testing results as
three sets together with an error bound on their correctness, demonstrated
exemplarily using a real biological dataset.
Date Issued
2016-04-14
Date Acceptance
2016-01-20
Citation
Scandinavian Journal of Statistics, 2016, 43 (4), pp.1046-1063
ISSN
1467-9469
Publisher
Wiley
Start Page
1046
End Page
1063
Journal / Book Title
Scandinavian Journal of Statistics
Volume
43
Issue
4
Copyright Statement
© 2016 Board of the Foundation of the Scandinavian Journal of Statistics. This is the peer reviewed version of the following article: A framework for Monte Carlo based multiple testing, which has been accepted for publication in the journal Scandinavian Journal of Statistics, which has been published in final form at http://onlinelibrary.wiley.com/doi/10.1111/sjos.12228/abstract
Subjects
stat.ME
stat.ME
Publication Status
Published