Chemical Boltzmann Machines
File(s)1707.06221v1.pdf (2.59 MB)
Accepted version
Author(s)
Type
Journal Article
Abstract
How smart can a micron-sized bag of chemicals be? How can an artificial or
real cell make inferences about its environment? From which kinds of
probability distributions can chemical reaction networks sample? We begin
tackling these questions by showing four ways in which a stochastic chemical
reaction network can implement a Boltzmann machine, a stochastic neural network
model that can generate a wide range of probability distributions and compute
conditional probabilities. The resulting models, and the associated theorems,
provide a road map for constructing chemical reaction networks that exploit
their native stochasticity as a computational resource. Finally, to show the
potential of our models, we simulate a chemical Boltzmann machine to classify
and generate MNIST digits in-silico.
real cell make inferences about its environment? From which kinds of
probability distributions can chemical reaction networks sample? We begin
tackling these questions by showing four ways in which a stochastic chemical
reaction network can implement a Boltzmann machine, a stochastic neural network
model that can generate a wide range of probability distributions and compute
conditional probabilities. The resulting models, and the associated theorems,
provide a road map for constructing chemical reaction networks that exploit
their native stochasticity as a computational resource. Finally, to show the
potential of our models, we simulate a chemical Boltzmann machine to classify
and generate MNIST digits in-silico.
Date Issued
2017-08-24
Date Acceptance
2017-06-12
Citation
Lecture Notes in Computer Science, 2017, 10467, pp.210-231
ISSN
0302-9743
Publisher
Springer Verlag
Start Page
210
End Page
231
Journal / Book Title
Lecture Notes in Computer Science
Volume
10467
Copyright Statement
The final publication is available at Springer via http://dx.doi.org/10.1007/978-3-319-66799-7_14
Sponsor
The Royal Society
Identifier
http://arxiv.org/abs/1707.06221v1
Grant Number
UF150067
Subjects
q-bio.MN
q-bio.MN
Notes
To Appear at DNA 23 Conference
Publication Status
Published