Thermodynamics of computational copying in biochemical systems
File(s)PhysRevX.7.021004.pdf (388.14 KB)
Published version
Author(s)
Ouldridge, TE
Govern, CC
Wolde, PRT
Type
Journal Article
Abstract
Living cells use readout molecules to record the state of receptor proteins, similar to measurements or copies in typical computational devices. But is this analogy rigorous? Can cells be optimally efficient, and if not, why? We show that, as in computation, a canonical biochemical readout network generates correlations; extracting no work from these correlations sets a lower bound on dissipation. For general input, the biochemical network cannot reach this bound, even with arbitrarily slow reactions or weak thermodynamic driving. It faces an accuracy-dissipation trade-off that is qualitatively distinct from and worse than implied by the bound, and more complex steady-state copy processes cannot perform better. Nonetheless, the cost remains close to the thermodynamic bound unless accuracy is extremely high. Additionally, we show that biomolecular reactions could be used in thermodynamically optimal devices under exogenous manipulation of chemical fuels, suggesting an experimental system for testing computational thermodynamics.
Date Issued
2017-04-01
Date Acceptance
2017-03-09
Citation
Physical Review X, 2017, 7 (2)
ISSN
2160-3308
Publisher
American Physical Society
Journal / Book Title
Physical Review X
Volume
7
Issue
2
Copyright Statement
© 2017 The Authors. Published by the American Physical Society under the terms of
the Creative Commons Attribution 3.0 License. Further distribution of this work must maintain attribution to the author(s) and the published article’s title, journal citation, and DOI (https://creativecommons.org/licenses/by/3.0/)
the Creative Commons Attribution 3.0 License. Further distribution of this work must maintain attribution to the author(s) and the published article’s title, journal citation, and DOI (https://creativecommons.org/licenses/by/3.0/)
Sponsor
The Royal Society
Identifier
http://arxiv.org/abs/1503.00909v4
Grant Number
UF150067
Subjects
q-bio.MN
q-bio.MN
cond-mat.stat-mech
physics.bio-ph
Publication Status
Published
Article Number
021004
Date Publish Online
2017-04-07