A computational model of gene expression in an inducible synthetic circuit
File(s)9789814295291_0043.pdf (945.38 KB)
Accepted version
Author(s)
Ceroni, F
Furini, S
Cavalcanti, S
Type
Conference Paper
Abstract
Synthetic biology aims to the rational design of gene circuits with predictable behaviours. Great efforts have been done so far to introduce in the field mathematical models that could facilitate the design of synthetic networks. Here we present a mathematical model of a synthetic gene-circuit with a negative feedback. The closed loop configuration allows the control of transcription by an inducer molecule (IPTG). Escherichia coli bacterial cells were transformed and expression of a fluorescent reporter (GFP) was measured for different inducer levels. Computer model simulations well reproduced the experimental induction data, using a single fitting parameter. Independent genetic components were used to assemble the synthetic circuit. The mathematical model here presented could be useful to predict how changes in these genetic components affect the behaviour of the synthetic circuit.
Date Issued
2009-10-01
Date Acceptance
2009-10-01
Citation
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 2009, pp.409-420
ISSN
2335-6936
Publisher
World Scientific Publishing Company
Start Page
409
End Page
420
Journal / Book Title
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing
Copyright Statement
© 2009 World Scientific Publishing Company
Source
Biocomputing 2010
Subjects
Computational Biology
Computer Simulation
Escherichia coli
Escherichia coli Proteins
Gene Expression
Gene Regulatory Networks
Genes, Reporter
Green Fluorescent Proteins
Lac Repressors
Models, Genetic
Promoter Regions, Genetic
Synthetic Biology
Publication Status
Published
Start Date
2010-01-04
Finish Date
2010-01-08
Coverage Spatial
Kamuela, Hawaii, USA