Dealing with diversity in computational cancer modeling
File(s)CI_Johnson_et_al_2013.pdf (690.09 KB)
Published version
Author(s)
Type
Journal Article
Abstract
This paper discusses the need for interconnecting computational cancer models from different sources and scales within clinically relevant scenarios to increase the accuracy of the models and speed up their clinical adaptation, validation, and eventual translation. We briefly review current interoperability efforts drawing upon our experiences with the development of in silico models for predictive oncology within a number of European Commission Virtual Physiological Human initiative projects on cancer. A clinically relevant scenario, addressing brain tumor modeling that illustrates the need for coupling models from different sources and levels of complexity, is described. General approaches to enabling interoperability using XML-based markup languages for biological modeling are reviewed, concluding with a discussion on efforts towards developing cancer-specific XML markup to couple multiple component models for predictive in silico oncology.
Date Issued
2013-05-07
Citation
Cancer Informatics, 2013, 12, pp.115-124
ISSN
1176-9351
Publisher
Libertas Academica
Start Page
115
End Page
124
Journal / Book Title
Cancer Informatics
Volume
12
Copyright Statement
© the author(s), publisher and licensee Libertas Academica Ltd. This is an open access article published under the Creative Commons CC-BY-NC 3.0 license.
License URL
Description
25.02.15 KB. Ok to add published version to spiral, OA paper
Identifier
http://www.ncbi.nlm.nih.gov/pubmed/23700360
cin-12-2013-115
Publication Status
Published
Coverage Spatial
New Zealand