A computationally-inexpensive strategy in CT image data augmentation for robust deep learning classification in the early stages of an outbreak
Author(s)
Hou, Yikun
Navarro-Cia, Miguel
Type
Journal Article
Abstract
Coronavirus disease 2019 (COVID-19) has spread globally for over three years, and chest computed tomography (CT) has been used to diagnose COVID-19 and identify lung damage in COVID-19 patients. Given its widespread, CT will remain a common diagnostic tool in future pandemics, but its effectiveness at the beginning of any pandemic will depend strongly on the ability to classify CT scans quickly and correctly when only limited resources are available, as it will happen inevitably again in future pandemics. Here, we resort into the transfer learning procedure and limited hyperparameters to use as few computing resources as possible for COVID-19 CT images classification. Advanced Normalisation Tools (ANTs) are used to synthesise images as augmented/independent data and trained on EfficientNet to investigate the effect of synthetic images. On the COVID-CT dataset, classification accuracy increases from 91.15% to 95.50% and Area Under the Receiver Operating Characteristic (AUC) from 96.40% to 98.54%. We also customise a small dataset to simulate data collected in the early stages of the outbreak and report an improvement in accuracy from 85.95% to 94.32% and AUC from 93.21% to 98.61%. This study provides a feasible Low-Threshold, Easy-To-Deploy and Ready-To-Use solution with a relatively low computational cost for medical image classification at an early stage of an outbreak in which scarce data are available and traditional data augmentation may fail. Hence, it would be most suitable for low-resource settings.
Date Issued
2023-09-01
Date Acceptance
2023-07-06
Citation
Biomedical Physics & Engineering Express, 2023, 9 (5)
ISSN
2057-1976
Publisher
IOP Publishing
Journal / Book Title
Biomedical Physics & Engineering Express
Volume
9
Issue
5
Copyright Statement
© 2023 The Author(s). Published by IOP Publishing Ltd. Original content from this work may be used under the terms of the Creative Commons Attribution 4.0 licence. Any further distribution of this work must maintain attribution to the author(s) and the title of the work, journal citation and DOI.
License URL
Identifier
https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:001027885600001&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=a2bf6146997ec60c407a63945d4e92bb
Subjects
computed tomography
COVID-19
data augmentation
deep learning
Life Sciences & Biomedicine
NEURAL-NETWORKS
Radiology, Nuclear Medicine & Medical Imaging
Science & Technology
Publication Status
Published
Article Number
ARTN 055003
Date Publish Online
2023-07-18