A comprehensive network atlas reveals that Turing patterns are common but not robust
File(s)Cell_Systems___Turing___Accepted.pdf (4.97 MB)
Accepted version
Author(s)
Scholes, Natalie
Schnoerr, David
Isalan, Mark
Stumpf, Michael
Type
Journal Article
Abstract
Turing patterns (TPs) underlie many fundamental developmental processes, but they operate over narrow parameter ranges, raising the conundrum of how evolution can ever discover them. Here we explore TP design space to address this question and to distill design rules. We exhaustively analyze 2- and 3-node biological candidate Turing systems, amounting to 7,625 networks and more than 3 × 10^11 analyzed scenarios. We find that network structure alone neither implies nor guarantees emergent TPs. A large fraction (>61%) of network design space can produce TPs, but these are sensitive to even subtle changes in parameters, network structure, and regulatory mechanisms. This implies that TP networks are more common than previously thought, and evolution might regularly encounter prototypic solutions. We deduce compositional rules for TP systems that are almost necessary and sufficient (96% of TP networks contain them, and 92% of networks implementing them produce TPs). This comprehensive network atlas provides the blueprints for identifying natural TPs and for engineering synthetic systems.
Date Issued
2019-09-25
Date Acceptance
2019-07-23
Citation
Cell Systems, 2019, 9 (3), pp.243-257.e4
ISSN
2405-4712
Publisher
Elsevier (Cell Press)
Start Page
243
End Page
257.e4
Journal / Book Title
Cell Systems
Volume
9
Issue
3
Copyright Statement
© 2019 Elsevier Ltd. All rights reserved. This manuscript is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International Licence http://creativecommons.org/licenses/by-nc-nd/4.0/
Sponsor
VolkwagenStiftung
Grant Number
63062
Subjects
Science & Technology
Life Sciences & Biomedicine
Biochemistry & Molecular Biology
Cell Biology
POSITIONAL INFORMATION
BIFURCATION-ANALYSIS
DIFFUSION
DIFFERENTIATION
TOPOLOGIES
FRAMEWORK
SYSTEM
SWITCH
CELLS
MODEL
developmental patterning
network atlas
reaction-diffusion systems
synthetic biology
Publication Status
Published
Date Publish Online
2019-09-18