SAIL--a software system for sample and phenotype availability across biobanks and cohorts.
Author(s)
Type
Journal Article
Abstract
Summary: The Sample avAILability system-SAIL-is a web based application for searching, browsing and annotating biological sample collections or biobank entries. By providing individual-level information on the availability of specific data types (phenotypes, genetic or genomic data) and samples within a collection, rather than the actual measurement data, resource integration can be facilitated. A flexible data structure enables the collection owners to provide descriptive information on their samples using existing or custom vocabularies. Users can query for the available samples by various parameters combining them via logical expressions. The system can be scaled to hold data from millions of samples with thousands of variables. © The Author(s) 2010. Published by Oxford University Press.
Date Issued
2011-02-15
Start Page
589
End Page
591
Journal / Book Title
Bioinformatics
Volume
27
Issue
4
Copyright Statement
© The Author(s) 2010. Published by Oxford University Press.
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/
by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/
by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
Identifier
http://www.ncbi.nlm.nih.gov/pubmed/21169373
btq693
Subjects
Computational Biology
Database Management Systems
Genomics
Internet
Meta-Analysis as Topic
Phenotype
Software
Bioinformatics
01 Mathematical Sciences
06 Biological Sciences
08 Information And Computing Sciences
Publication Status
Published
Coverage Spatial
England