Exome-wide association study reveals novel susceptibility genes to sporadic dilated cardiomyopathy
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Author(s)
Type
Journal Article
Abstract
Aims:
Dilated cardiomyopathy (DCM) is an important cause of heart failure with a strong familial component. We performed an exome-wide array-based association study (EWAS) to assess the contribution of missense variants to sporadic DCM.
Methods and results:
116,855 single nucleotide variants (SNVs) were analyzed in 2796 DCM patients and 6877 control subjects from 6 populations of European ancestry. We confirmed two previously identified associations with SNVs in BAG3 and ZBTB17 and discovered six novel DCM-associated loci (Q-value<0.01). The lead-SNVs at novel loci are common and located in TTN, SLC39A8, MLIP, FLNC, ALPK3 and FHOD3. In silico fine mapping identified HSPB7 as the most likely candidate at the ZBTB17 locus. Rare variant analysis (MAF<0.01) demonstrated significant association for TTN variants only (P = 0.0085). All candidate genes but one (SLC39A8) exhibit preferential expression in striated muscle tissues and mutations in TTN, BAG3, FLNC and FHOD3 are known to cause familial cardiomyopathy. We also investigated a panel of 48 known cardiomyopathy genes. Collectively, rare (n = 228, P = 0.0033) or common (n = 36, P = 0.019) variants with elevated in silico severity scores were associated with DCM, indicating that the spectrum of genes contributing to sporadic DCM extends beyond those identified here.
Conclusion:
We identified eight loci independently associated with sporadic DCM. The functions of the best candidate genes at these loci suggest that proteostasis regulation might play a role in DCM pathophysiology.
Dilated cardiomyopathy (DCM) is an important cause of heart failure with a strong familial component. We performed an exome-wide array-based association study (EWAS) to assess the contribution of missense variants to sporadic DCM.
Methods and results:
116,855 single nucleotide variants (SNVs) were analyzed in 2796 DCM patients and 6877 control subjects from 6 populations of European ancestry. We confirmed two previously identified associations with SNVs in BAG3 and ZBTB17 and discovered six novel DCM-associated loci (Q-value<0.01). The lead-SNVs at novel loci are common and located in TTN, SLC39A8, MLIP, FLNC, ALPK3 and FHOD3. In silico fine mapping identified HSPB7 as the most likely candidate at the ZBTB17 locus. Rare variant analysis (MAF<0.01) demonstrated significant association for TTN variants only (P = 0.0085). All candidate genes but one (SLC39A8) exhibit preferential expression in striated muscle tissues and mutations in TTN, BAG3, FLNC and FHOD3 are known to cause familial cardiomyopathy. We also investigated a panel of 48 known cardiomyopathy genes. Collectively, rare (n = 228, P = 0.0033) or common (n = 36, P = 0.019) variants with elevated in silico severity scores were associated with DCM, indicating that the spectrum of genes contributing to sporadic DCM extends beyond those identified here.
Conclusion:
We identified eight loci independently associated with sporadic DCM. The functions of the best candidate genes at these loci suggest that proteostasis regulation might play a role in DCM pathophysiology.
Date Issued
2017-03-15
Date Acceptance
2017-02-13
Citation
PLOS ONE, 2017, 12 (3)
ISSN
1932-6203
Publisher
PUBLIC LIBRARY OF SCIENCE
Journal / Book Title
PLOS ONE
Volume
12
Issue
3
Copyright Statement
© 2017 The Author(s). This is an open
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free of all
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and may be freely
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CC0 (https://creativecommons.org/publicdomain/zero/1.0/) public
domain
dedication.
access
article,
free of all
copyright,
and may be freely
reproduced,
distributed,
transmi
tted, modifie
d, built upon,
or
otherwise
used
by anyone
for any lawful
purpose.
The work
is made
available
under
the Creative
Commons
CC0 (https://creativecommons.org/publicdomain/zero/1.0/) public
domain
dedication.
Sponsor
Fondation Leducq
National Institute for Health Research
British Heart Foundation
Wellcome Trust
Department of Health
Identifier
http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000396311700021&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=1ba7043ffcc86c417c072aa74d649202
Grant Number
11 CVD-01
RDB02 79560
PG/12/27/29489
HICF-R6-373
HICF-R6-373
Subjects
Science & Technology
Multidisciplinary Sciences
Science & Technology - Other Topics
SKELETAL-MUSCLES
COMMON VARIANTS
HEART-FAILURE
P19CL6 CELLS
PROTEIN
MUTATIONS
HSPB7
FHOD3
DIFFERENTIATION
ARCHITECTURE
General Science & Technology
MD Multidisciplinary
Publication Status
Published
Article Number
ARTN e0172995