Key reaction components affect the kinetics and performance robustness of cell-free protein synthesis reactions
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Published version
Author(s)
Type
Journal Article
Abstract
Cell-free protein synthesis (CFPS) reactions have grown in popularity with particular interest in applications such as gene construct prototyping, biosensor technologies and the production of proteins with novel chemistry. Work has frequently focussed on optimising CFPS protocols for improving protein yield, reducing cost, or developing streamlined production protocols. Here we describe a statistical Design of Experiments analysis of 20 components of a popular CFPS reaction buffer. We simultaneously identify factors and factor interactions that impact on protein yield, rate of reaction, lag time and reaction longevity. This systematic experimental approach enables the creation of a statistical model capturing multiple behaviours of CFPS reactions in response to components and their interactions. We show that a novel reaction buffer outperforms the reference reaction by 400% and importantly reduces failures in CFPS across batches of cell lysates, strains of E. coli, and in the synthesis of different proteins. Detailed and quantitative understanding of how reaction components affect kinetic responses and robustness is imperative for future deployment of cell-free technologies.
Date Issued
2022
Date Acceptance
2021-12-08
Citation
Computational and Structural Biotechnology Journal, 2022, 20, pp.218-229
ISSN
2001-0370
Publisher
Elsevier BV
Start Page
218
End Page
229
Journal / Book Title
Computational and Structural Biotechnology Journal
Volume
20
Copyright Statement
2021 The Authors. Published by Elsevier B.V. on behalf of Research Network of Computational and
Structural Biotechnology. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
Structural Biotechnology. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
License URL
Identifier
https://www.sciencedirect.com/science/article/pii/S2001037021005213?via%3Dihub
Subjects
0103 Numerical and Computational Mathematics
0802 Computation Theory and Mathematics
Publication Status
Published
Date Publish Online
2021-12-13