Domain-independent ppg signal quality assessment framework via representation learning
Author(s)
Abdulsadig, Rawan
Rodriguez-Villegas, Esther
Type
Journal Article
Abstract
Photoplethysmography (PPG) is a widely used non-invasive sensing technique for monitoring cardiovascular and respiratory parameters, however, its measurements are highly susceptible to artifacts, which can degrade signal quality and, in turn, the accuracy of derived vital signs. Reliable PPG signal quality assessment (SQA) is therefore critical, yet existing SQA methods often
rely on handcrafted features or ad-hoc thresholds and tend to be dataset-specific, limiting their generalizability across different sensor locations and users. To address these gaps, this paper proposes a novel SQA approach for PPG that is real-time compatible and sensor-location invariant. The method leverages deep representation learning by fine-tuning a pre-trained PPG transformer
(PPG-PT) with a triplet loss to learn an embedding space where PPG segments are meaning fully partitioned based on their morphology. Signal quality is then quantified by computing each window’s embedding distance to a set of reference embeddings representing high-quality PPG segments, yielding a flexible reference-based quality score without requiring any model retraining when adapting to new devices or domains. The proposed framework was evaluated on three PPG
datasets: the Complex System Laboratory (CSL) dataset providing finger PPG, the Wearable and Clinical Devices (WCS) for wrist PPG signals, and the Apnea and Artifacts (AA) dataset representing neck PPG signals, encompassing a wide range of artifact types and recording conditions. The model achieved strong agreement with expert annotations on the CSL dataset, with an F1-score of ≈90%. It also demonstrated robust generalization on the WCS wearable dataset: using a generalized reference set drawn from multiple subjects, the approach attained a high F1 score of about ≈95% on wrist PPG data, highlighting the method’s potential for population-level deployment. Performance on the AA neck PPG dataset was moderately acceptable with ≈70%
F1-score, likely due to the complexity and varying executions of the different artifacts presented
in the dataset. The proposed methodology provides a deep learning SQA framework capable of generalizing across different PPG sensor locations and devices.
rely on handcrafted features or ad-hoc thresholds and tend to be dataset-specific, limiting their generalizability across different sensor locations and users. To address these gaps, this paper proposes a novel SQA approach for PPG that is real-time compatible and sensor-location invariant. The method leverages deep representation learning by fine-tuning a pre-trained PPG transformer
(PPG-PT) with a triplet loss to learn an embedding space where PPG segments are meaning fully partitioned based on their morphology. Signal quality is then quantified by computing each window’s embedding distance to a set of reference embeddings representing high-quality PPG segments, yielding a flexible reference-based quality score without requiring any model retraining when adapting to new devices or domains. The proposed framework was evaluated on three PPG
datasets: the Complex System Laboratory (CSL) dataset providing finger PPG, the Wearable and Clinical Devices (WCS) for wrist PPG signals, and the Apnea and Artifacts (AA) dataset representing neck PPG signals, encompassing a wide range of artifact types and recording conditions. The model achieved strong agreement with expert annotations on the CSL dataset, with an F1-score of ≈90%. It also demonstrated robust generalization on the WCS wearable dataset: using a generalized reference set drawn from multiple subjects, the approach attained a high F1 score of about ≈95% on wrist PPG data, highlighting the method’s potential for population-level deployment. Performance on the AA neck PPG dataset was moderately acceptable with ≈70%
F1-score, likely due to the complexity and varying executions of the different artifacts presented
in the dataset. The proposed methodology provides a deep learning SQA framework capable of generalizing across different PPG sensor locations and devices.
Date Acceptance
2026-06-16
Citation
Scientific Reports
ISSN
2045-2322
Publisher
Nature Portfolio
Journal / Book Title
Scientific Reports
Copyright Statement
Copyright This paper is embargoed until publication. Once published the Version of Record (VoR) will be available on immediate open access.
License URL
Publication Status
Accepted