The interactions between a small molecule and G-quadruplexes are visualised by fluorescence lifetime imaging microscopy
File(s)Shivalingam_interactions_between_ncomms9178.pdf (1.22 MB)
Published version
Author(s)
Type
Journal Article
Abstract
Guanine-rich oligonucleotides can fold into quadruple-stranded helical structures known as G-quadruplexes. Mounting experimental evidence has gathered suggesting that these non-canonical nucleic acid structures form in vivo and play essential biological roles. However, to date, there are no small-molecule optical probes to image G-quadruplexes in live cells. Herein, we report the design and development of a small fluorescent molecule, which can be used as an optical probe for G-quadruplexes. We demonstrate that the fluorescence lifetime of this new probe changes considerably upon interaction with different nucleic acid topologies. Specifically, longer fluorescence lifetimes are observed in vitro for G-quadruplexes than for double- and single-stranded nucleic acids. Cellular studies confirm that this molecule is cell permeable, has low cytotoxicity and localizes primarily in the cell nucleus. Furthermore, using fluorescence lifetime imaging microscopy, live-cell imaging suggests that the probe can be used to study the interaction of small molecules with G-quadruplexes in vivo.
Date Issued
2015-09-09
Date Acceptance
2015-07-25
Citation
Nature Communications, 2015, 6, pp.1-10
ISSN
2041-1723
Publisher
Nature Publishing Group: Nature Communications
Start Page
1
End Page
10
Journal / Book Title
Nature Communications
Volume
6
Copyright Statement
© 2015 The Authors. This work is licensed under a Creative Commons Attribution 4.0
International License. The images or other third party material in this
article are included in the article’s Creative Commons license, unless indicated otherwise
in the credit line; if the material is not included under the Creative Commons license,
users will need to obtain permission from the license holder to reproduce the material.
To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
International License. The images or other third party material in this
article are included in the article’s Creative Commons license, unless indicated otherwise
in the credit line; if the material is not included under the Creative Commons license,
users will need to obtain permission from the license holder to reproduce the material.
To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
License URL
Sponsor
Engineering & Physical Science Research Council (EPSRC)
Engineering & Physical Science Research Council (EPSRC)
Commission of the European Communities
Engineering & Physical Science Research Council (EPSRC)
Identifier
https://www.nature.com/articles/ncomms9178
Grant Number
EP/H005285/1
EP/I003983/1
327334
EP/K039946/1
Subjects
Science & Technology
Multidisciplinary Sciences
Science & Technology - Other Topics
PHOTOINDUCED ELECTRON-TRANSFER
AZATRIANGULENIUM SALTS
LIVING CELLS
DNA
TELOMERES
PROMOTER
BINDING
DUPLEX
PROBES
Cell Line, Tumor
Fluorescent Dyes
G-Quadruplexes
Humans
In Vitro Techniques
Intravital Microscopy
Microscopy, Confocal
Microscopy, Fluorescence
Nucleic Acid Conformation
Oligonucleotides
Spectrometry, Fluorescence
Cell Line, Tumor
Humans
Oligonucleotides
Fluorescent Dyes
Microscopy, Confocal
Microscopy, Fluorescence
Spectrometry, Fluorescence
Nucleic Acid Conformation
G-Quadruplexes
In Vitro Techniques
Intravital Microscopy
Publication Status
Published
Article Number
8178
Date Publish Online
2015-09-09