Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas
File(s)1-s2.0-S2405471218300978-main.pdf (5.9 MB)
Published version
Author(s)
Type
Journal Article
Abstract
Although the MYC oncogene has been implicated in cancer, a systematic assessment of alterations of MYC, related transcription factors, and co-regulatory proteins, forming the proximal MYC network (PMN), across human cancers is lacking. Using computational approaches, we define genomic and proteomic features associated with MYC and the PMN across the 33 cancers of The Cancer Genome Atlas. Pan-cancer, 28% of all samples had at least one of the MYC paralogs amplified. In contrast, the MYC antagonists MGA and MNT were the most frequently mutated or deleted members, proposing a role as tumor suppressors. MYC alterations were mutually exclusive with PIK3CA, PTEN, APC, or BRAF alterations, suggesting that MYC is a distinct oncogenic driver. Expression analysis revealed MYC-associated pathways in tumor subtypes, such as immune response and growth factor signaling; chromatin, translation, and DNA replication/repair were conserved pan-cancer. This analysis reveals insights into MYC biology and is a reference for biomarkers and therapeutics for cancers with alterations of MYC or the PMN.
Date Issued
2018-03-28
Date Acceptance
2018-03-02
Citation
Cell Systems, 2018, 6 (3), pp.282-300
ISSN
2405-4712
Publisher
Elsevier (Cell Press)
Start Page
282
End Page
300
Journal / Book Title
Cell Systems
Volume
6
Issue
3
Copyright Statement
© 2018 The Authors. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
Sponsor
SAIC-F-Frederick, Inc
Leidos Biomedical Research, Inc.
Identifier
http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000428798600015&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=1ba7043ffcc86c417c072aa74d649202
Grant Number
TCGA Pilot Program
15Y011ST
Subjects
Science & Technology
Life Sciences & Biomedicine
Biochemistry & Molecular Biology
Cell Biology
RNA-POLYMERASE-II
COPY-NUMBER ALTERATION
C-MYC
CELL-PROLIFERATION
MIR-200 FAMILY
GENE-EXPRESSION
MAX MUTATIONS
IN-VIVO
TRANSCRIPTIONAL REPRESSORS
MESENCHYMAL TRANSITION
MAX
MNT
MYC genomic alterations
TCGA
The Cancer Genome Atlas
Cancer Genome Atlas Network
Publication Status
Published
Date Publish Online
2018-03-28