Large clones of pre-existing T cells drive early immunity against SARS-COV-2 and LCMV infection
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Published version
Author(s)
Type
Journal Article
Abstract
T cell responses precede antibody and may provide early control of infection. We analyzed the clonal basis of this rapid response following SARS-COV-2 infection. We applied T cell receptor (TCR) sequencing to define the trajectories of individual T cell clones immediately. In SARS-COV-2 PCR+ individuals, a wave of TCRs strongly but transiently expand, frequently peaking the same week as the first positive PCR test. These expanding TCR CDR3s were enriched for sequences functionally annotated as SARS-COV-2 specific. Epitopes recognized by the expanding TCRs were highly conserved between SARS-COV-2 strains but not with circulating human coronaviruses. Many expanding CDR3s were present at high frequency in pre-pandemic repertoires. Early response TCRs specific for lymphocytic choriomeningitis virus epitopes were also found at high frequency in the preinfection naive repertoire. High-frequency naive precursors may allow the T cell response to respond rapidly during the crucial early phases of acute viral infection.
Date Issued
2023-06-16
Date Acceptance
2023-05-17
Citation
iScience, 2023, 26 (6), pp.1-20
ISSN
2589-0042
Publisher
Elsevier
Start Page
1
End Page
20
Journal / Book Title
iScience
Volume
26
Issue
6
Copyright Statement
© 2023 The Author(s). This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
License URL
Identifier
https://www.ncbi.nlm.nih.gov/pubmed/37275518
PII: S2589-0042(23)01014-3
Subjects
Biological sciences
Cell biology
Immunity
Immunology
Publication Status
Published
Coverage Spatial
United States
Article Number
106937
Date Publish Online
2023-05-22