An open-source toolbox for standardized use of PhysioNet Sleep EDF Expanded Database.
File(s)EMBC15_1915_FI.pdf (100.99 KB)
Accepted version
Author(s)
Imtiaz, SA
Rodriguez-Villegas, E
Type
Conference Paper
Abstract
PhysioNet Sleep EDF database has been the most popular source of data used for developing and testing many automatic sleep staging algorithms. However, the recordings from this database has been used in an inconsistent fashion. For example, arbitrary selection of start and end times from long term recordings, data-hypnogram mismatches, different performance metrics and hypnogram conversion from R&K to AASM. All these differences result in different data sections and performance metrics being used by researchers thereby making any direct comparison between algorithms very difficult. Recently, a superset of this database has been made available on PhysioNet, known as the Sleep EDF Expanded Database which includes 61 recordings. This provides an opportunity to standardize the way in which signals from this database should be used. With this goal in mind, we present in this paper a toolbox for automatically downloading and extracting recordings from the Sleep EDF Expanded database and converting them to a suitable format for use in MATLAB. This toolbox contains functions for selecting appropriate data for sleep analysis (based on our previous recommendations for sleep staging), hypnogram conversion and computation of performance metrics. Its use makes it simpler to start using the new sleep database and also provides a foundation for much-needed standardization in this research field.
Date Issued
2015-08-25
Date Acceptance
2015-01-01
Citation
Conf Proc IEEE Eng Med Biol Soc, 2015, pp.6014-6017
ISSN
1557-170X
Publisher
IEEE
Start Page
6014
End Page
6017
Journal / Book Title
Conf Proc IEEE Eng Med Biol Soc
Copyright Statement
© 2015 IEEE. Personal use of this material is permitted. Permission from IEEE must be obtained for all other uses, in any current or future media, including reprinting/republishing this material for advertising or promotional purposes, creating new collective works, for resale or redistribution to servers or lists, or reuse of any copyrighted component of this work in other works.
Sponsor
Commission of the European Communities
Grant Number
Contract No. 239749
Source
2015 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC
Publication Status
Published
Start Date
2015-08-25
Finish Date
2015-08-29
Coverage Spatial
Milan