Synthetic biology open language visual (SBOL visual) version 2.2
Author(s)
Type
Journal Article
Abstract
People who are engineering biological organisms often find it useful to communicate in diagrams, both about the structure of the nucleic acid sequences that they are engineering and about the functional relationships between sequence features and other molecular species. Some typical practices and conventions have begun to emerge for such diagrams. The Synthetic Biology Open Language Visual (SBOL Visual) has been developed as a standard for organizing and systematizing such conventions in order to produce a coherent language for expressing the structure and function of genetic designs. This document details version 2.2 of SBOL Visual, which builds on the prior SBOL Visual 2.1 in several ways. First, the grounding of molecular species glyphs is changed from BioPAX to SBO, aligning with the use of SBO terms for interaction glyphs. Second, new glyphs are added for proteins, introns, and polypeptide regions (e. g., protein domains), the prior recommended macromolecule glyph is deprecated in favor of its alternative, and small polygons are introduced as alternative glyphs for simple chemicals.
Date Issued
2020-06-01
Date Acceptance
2020-04-16
Citation
Journal of Integrative Bioinformatics, 2020, 17 (2-3), pp.1-85
ISSN
1613-4516
Publisher
IMBio e.V.
Start Page
1
End Page
85
Journal / Book Title
Journal of Integrative Bioinformatics
Volume
17
Issue
2-3
Copyright Statement
© 2020 Hasan Baig et al., published by De Gruyter. This work is licensed under the Creative Commons Attribution
4.0 Public License.
4.0 Public License.
License URL
Identifier
http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000562630200005&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=1ba7043ffcc86c417c072aa74d649202
Subjects
Science & Technology
Life Sciences & Biomedicine
Mathematical & Computational Biology
diagrams
SBOL visual
standards
Publication Status
Published
Article Number
ARTN 20200014
Date Publish Online
2020-06-10