Complete genome for Actinobacillus pleuropneumoniae serovar 8 reference strain 405: comparative analysis with draft genomes for different laboratory stock cultures indicates little genetic variation
File(s)mgen000687.pdf (222.7 KB)
Published version
Author(s)
Type
Journal Article
Abstract
We report here the complete genome sequence of the widely studied Actinobacillus pleuropneumoniae serovar 8 reference strain 405, generated using the Pacific Biosciences (PacBio) RS II platform. Furthermore, we compared draft sequences generated by Illumina sequencing of six stocks of this strain, including the same original stock used to generate the PacBio sequence, held in different countries and found little genetic variation, with only three SNPs identified, all within the degS gene. However, sequences of two small plasmids, pARD3079 and p405tetH, detected by Illumina sequencing of the draft genomes were not identified in the PacBio sequence of the reference strain.
Date Issued
2021-11-24
Date Acceptance
2021-10-05
Citation
Microbial Genomics, 2021, 7 (11)
ISSN
2057-5858
Publisher
Microbiology Society
Journal / Book Title
Microbial Genomics
Volume
7
Issue
11
Sponsor
Biotechnology and Biological Sciences Research Council (BBSRC)
Biotechnology and Biological Sciences Research Council (BBSRC)
Biotechnology and Biological Sciences Research Council (BBSRC)
Biotechnology and Biological Sciences Research Council
Biotechnology and Biological Sciences Research Council (BBSRC)
Biotechnology and Biological Sciences Research Council (BBSRC)
Biotechnology and Biological Sciences Research Council
Biotechnology and Biological Sciences Research Council (BBSRC)
Identifier
https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000687
Grant Number
CPA 1700
BB/G018553/1
BB/K020765/1
BB/G018553/1
BB/S002103/1
BB/S019901/1
BB/S019901/1
BB/S005897/1
Subjects
Actinobacillus pleuropneumoniae
SNPs
serovar 8 reference genome
0604 Genetics
0605 Microbiology
Publication Status
Published