Chain alignment of collagen I deciphered using computationally designed heterotrimers
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Accepted version
Supporting information
Author(s)
Type
Journal Article
Abstract
The most abundant member of the collagen protein family, collagen I (COL1), is composed of two similar (chain A) and one unique (chain B) polypeptides that self-assemble with one amino acid offset into a heterotrimeric triple helix. Given the offset, chain B can occupy either the leading (BAA), middle (ABA) or trailing (AAB) position of the triple helix, yielding three isomeric biomacromolecules with different protein recognition properties. Despite five decades of intensive research, there is no consensus on the position of chain B in COL1. Here, three triple-helical heterotrimers that each contained a putative Von Willebrand Factor (VWF) and discoidin domain receptor (DDR) recognition sequence from COL1 were designed with chain B permutated in all three positions. AAB demonstrated a strong preference for both VWF and DDR and also induced higher levels of cellular DDR phosphorylation. Thus, we resolve this long-standing mystery and show that COL1 adopts an AAB register.
Date Issued
2020-04-01
Date Acceptance
2019-11-20
Citation
Nature Chemical Biology, 2020, 16 (4), pp.423-429
ISSN
1552-4450
Publisher
Nature Research
Start Page
423
End Page
429
Journal / Book Title
Nature Chemical Biology
Volume
16
Issue
4
Copyright Statement
© 2020 Springer-Verlag. The final publication is available at Springer via https://doi.org/10.1038/s41589-019-0435-y
Identifier
https://www.nature.com/articles/s41589-019-0435-y
Subjects
Science & Technology
Life Sciences & Biomedicine
Biochemistry & Molecular Biology
VON-WILLEBRAND-FACTOR
DISCOIDIN DOMAIN RECEPTORS
AFFINITY BINDING
STRUCTURAL BASIS
TYROSINE KINASES
A3 DOMAIN
RECOGNITION
DDR2
IDENTIFICATION
PEPTIDES
Amino Acid Sequence
Amino Acids
Collagen
Collagen Type I
Computational Biology
Humans
Models, Molecular
Peptides
Protein Conformation
Humans
Collagen
Collagen Type I
Amino Acids
Peptides
Computational Biology
Amino Acid Sequence
Protein Conformation
Models, Molecular
0304 Medicinal and Biomolecular Chemistry
0601 Biochemistry and Cell Biology
Biochemistry & Molecular Biology
Publication Status
Published
Date Publish Online
2020-01-06