Cyclic peptides can engage a single binding pocket through highly divergent modes
File(s)26728.full.pdf (2.42 MB)
Published version
Author(s)
Type
Journal Article
Abstract
Cyclic peptide library screening technologies show immense promise for identifying drug leads and chemical probes for challenging targets. However, the structural and functional diversity encoded within such libraries is largely undefined. We have systematically profiled the affinity, selectivity and structural features of library-derived cyclic peptides selected to recognize three closely related targets: the acetyllysine-binding bromodomain proteins BRD2, -3 and -4. We report affinities as low as 100 pM and specificities of up to 106-fold. Crystal structures of 13 peptide-bromodomain complexes reveal remarkable diversity in both structure and binding mode, including both α-helical and β-sheet structures as well as bivalent binding modes. The peptides can also exhibit a high degree of structural pre-organization. Our data demonstrate the enormous potential within these libraries to provide diverse binding modes against a single target, which underpins their capacity to yield highly potent and selective ligands.
Date Issued
2020-10-12
Date Acceptance
2020-09-01
Citation
Proceedings of the National Academy of Sciences of USA, 2020, 117 (43), pp.26728-46738
ISSN
0027-8424
Publisher
National Academy of Sciences
Start Page
26728
End Page
46738
Journal / Book Title
Proceedings of the National Academy of Sciences of USA
Volume
117
Issue
43
Copyright Statement
© 2020 the Author(s). Published by PNAS. This open access article is distributed under Creative Commons Attribution License 4.0 (CC BY).
License URL
Identifier
https://www.pnas.org/content/117/43/26728
Subjects
Science & Technology
Multidisciplinary Sciences
Science & Technology - Other Topics
de novo cyclic peptides
BET bromodomain inhibition
structural biology
BRD3
BRD4
MACROCYCLIC PEPTIDES
STRUCTURAL BASIS
DISCOVERY
RECOGNITION
INHIBITION
MECHANISM
TARGET
POTENT
GATA1
BET bromodomain inhibition
BRD3
BRD4
de novo cyclic peptides
structural biology
Binding Sites
Drug Discovery
Humans
Peptide Library
Peptides, Cyclic
Protein Binding
Protein Domains
Transcription Factors
Humans
Peptides, Cyclic
Peptide Library
Transcription Factors
Binding Sites
Protein Binding
Drug Discovery
Protein Domains
Publication Status
Published
Date Publish Online
2020-10-12